Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0480
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 32 0.34
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 31 0.59
01_05_0438 + 22142646-22143659,22144319-22144858 31 0.78
08_02_0177 - 13786540-13787055 30 1.4
08_02_0176 - 13777476-13777568,13779610-13780053 30 1.4
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 30 1.4
05_02_0018 + 5626122-5626200,5626683-5626709,5626972-5627042,562... 30 1.8
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196... 30 1.8
02_01_0554 + 4083020-4083854,4083877-4083906,4084843-4084911,408... 29 2.4
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772... 29 4.1
07_01_0180 + 1266975-1267550 29 4.1
12_02_0897 + 24105498-24106109 28 5.5
09_03_0199 - 13421210-13421578 28 5.5
03_05_0267 - 22538631-22539452 28 5.5
11_06_0447 - 23710477-23710668,23711547-23712026 28 7.2
10_08_0338 + 16916429-16916650,16916728-16917900 27 9.6
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/48 (43%), Positives = 23/48 (47%)
Frame = -3
Query: 473 AVVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 330
A V+GL AV G V A+ GVG G S G A GG G G G
Sbjct: 43 AGVLGLIGETVGAVVGATVGAVDGVGAGASAGGGVAGGGGVAGGGARG 90
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 31.5 bits (68), Expect = 0.59
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 497 ADIRK*RLAVVIG-LPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 324
AD R R G + + EA G+ V AI G G GD+ GDA ++ +G+P
Sbjct: 368 ADARARRKGAAGGDVDEEEGEAGAGNGVPAIFGRGGGDAGEEGDAAVSKEETAASIGAP 426
>01_05_0438 + 22142646-22143659,22144319-22144858
Length = 517
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 431 GGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 339
GGD+V+ + GVG GD GD IG +G G
Sbjct: 377 GGDSVTVVQGVGDGDG--GGDGIGRGRKGSG 405
>08_02_0177 - 13786540-13787055
Length = 171
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 446 DAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 324
+ EA GD V A G G GD+ GDA ++ +G+P
Sbjct: 76 EGEAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116
>08_02_0176 - 13777476-13777568,13779610-13780053
Length = 178
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 446 DAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 324
+ EA GD V A G G GD+ GDA ++ +G+P
Sbjct: 76 EGEAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 446 DAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 324
+ EA GD V A G G GD+ GDA ++ +G+P
Sbjct: 76 EGEAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116
>05_02_0018 +
5626122-5626200,5626683-5626709,5626972-5627042,
5627123-5627248,5627726-5627755
Length = 110
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 461 GLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQ 348
G S DAE+ GG A+ G GRG CG++ G ++
Sbjct: 62 GGASHDAESEGGGMRWALVGEGRGSCAACGESGGEGER 99
>04_03_0252 -
13517763-13517861,13518845-13519315,13519400-13519679,
13519747-13519829
Length = 310
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 437 AVGGDAVSAISGVGRG-DSVRCGDAIGGSDQGRG 339
AVGGDA +A++G G G ++ G GG D G
Sbjct: 57 AVGGDAAAAVAGSGGGMTTMMMGGGGGGGDDAGG 90
>02_01_0554 +
4083020-4083854,4083877-4083906,4084843-4084911,
4085170-4085445,4085601-4085720,4086037-4086044
Length = 445
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 428 GDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 330
G+ +A + VG GD V G+ G D RGEVG
Sbjct: 202 GEKSAAAAEVGEGDEVEAGEEDGNGD--RGEVG 232
>07_03_1528 +
27474973-27475289,27476890-27477073,27477081-27477261,
27477270-27478206,27478384-27479035,27479352-27479798
Length = 905
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 440 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGSP 324
EA GG + I+G G ++ A GG QGR V +P
Sbjct: 8 EASGGPVMGDITGAGGEHRLQMPPAHGGGRQGRQVVAAP 46
>07_01_0180 + 1266975-1267550
Length = 191
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 470 VVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGG 357
V GL VDA A G D V++ + G V GD GG
Sbjct: 12 VGFGLFGVDAAAFGYDGVASDAAAGLSPVVGAGDGSGG 49
>12_02_0897 + 24105498-24106109
Length = 203
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 434 VGGDAVSAISGVGR-GDSV-RCGDAIGGSDQGRGEVGS 327
VGG A S +G G GD+V G A GG + G GEV +
Sbjct: 61 VGGGAPSTGAGAGGDGDTVVGAGAAAGGGNAGDGEVAA 98
>09_03_0199 - 13421210-13421578
Length = 122
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 425 DAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 330
D+ S + VGRG ++ IGGS G G G
Sbjct: 86 DSCSKANDVGRGHAIEGKSGIGGSSWGHGRHG 117
>03_05_0267 - 22538631-22539452
Length = 273
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 431 GGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 339
GG + SG G D CGD GG + G G
Sbjct: 135 GGSSGGEGSGGGSSDGEGCGDGSGGGELGGG 165
>11_06_0447 - 23710477-23710668,23711547-23712026
Length = 223
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 473 AVVIGLPSVDAEAVGGDAVSAISGV--GRGDSVRCGDAIGGSDQGRGEVGSP 324
A GLP A +GG A +A +G+ G G +V DA GG + G P
Sbjct: 55 AASAGLPGGGAVVLGGGASAAGAGLPGGGGAAVPGVDATGGEEVAGGGASVP 106
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3
Query: 381 YGIAAPYTAYGAYGVAPYGLGVHAW*TDHDREP 479
YG A P TAYG YG +G GV A H P
Sbjct: 275 YGHANPGTAYGNYGAGGFG-GVPAGYGGHYGNP 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,442,578
Number of Sequences: 37544
Number of extensions: 159060
Number of successful extensions: 730
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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