Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0480
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59) 31 0.80
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.80
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_2691| Best HMM Match : Luteo_Vpg (HMM E-Value=2.1) 30 1.8
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 28 5.6
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 28 7.4
SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2) 28 7.4
>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
Length = 421
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 357 APYGIAAPYGIAAPYTAYGAYGV-APYGL 440
AP+G+ PYG + P + YG PYGL
Sbjct: 381 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 409
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 357 APYGIAAPYGIAAPYTAYGAYGV-APYGL 440
AP+G+ PYG + P + YG PYGL
Sbjct: 1224 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1252
>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 440
+T PYGI PY I PY Y + PY +
Sbjct: 583 ITCPYGITYPYDITCPYNITCPYDITWPYDI 613
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 440
+T PY I PY I PY Y + PYG+
Sbjct: 595 ITCPYNITCPYDITWPYDITWPYDITCPYGI 625
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 440
+T PYGI YGI PY +G+ PY +
Sbjct: 619 ITCPYGITCLYGITCPYGITCQFGITCPYDI 649
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYG-VAPYGL 440
+T PY I PY I PY YG YG+
Sbjct: 463 ITCPYDITCPYDIKCPYDITCLYGFTCAYGI 493
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 440
+T PYGI +GI PY Y + PY +
Sbjct: 631 ITCPYGITCQFGITCPYDITCPYDITCPYDI 661
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 440
+T PY I PY I PY Y + PY +
Sbjct: 643 ITCPYDITCPYDITCPYDITCPYDITYPYDI 673
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 440
+T PY I PY I PY Y + PY +
Sbjct: 499 ITCPYDITCPYDITCPYYITCPYDITYPYDI 529
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 440
+T PY I PY I PY Y + PY +
Sbjct: 517 ITCPYDITYPYDITCPYDITCPYDITYPYDI 547
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 440
+T PY I PY I PY YG+ YG+
Sbjct: 601 ITCPYDITWPYDITWPYDITCPYGITCLYGI 631
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV 425
+T PY I PY I PY YG+
Sbjct: 667 ITYPYDITYPYDITCPYYITCPYGI 691
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYGL 440
+T PY I PY I PY Y + PY +
Sbjct: 715 ITYPYDITCPYHITCPYDITWPYDITWPYDI 745
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APY 434
+T PY I PY I PY Y + PY
Sbjct: 529 ITCPYDITCPYDITYPYDITYPYDITCPY 557
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 440
+T PY I PY I PY Y + PY +
Sbjct: 547 ITYPYDITCPYHITCPYDITCPYDIKCPYDI 577
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APY 434
+T PY I PY I PY Y + PY
Sbjct: 655 ITCPYDITCPYDITYPYDITYPYDITCPY 683
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APYGL 440
+T PYGI Y I PY Y + PY +
Sbjct: 685 ITCPYGITCQYDITCPYHITCPYHITCPYDI 715
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +3
Query: 351 VTAPYGIAAPYGIAAPYTAYGAYGV-APY 434
+T PY I PY I PY Y + PY
Sbjct: 697 ITCPYHITCPYHITCPYDITYPYDITCPY 725
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 357 APYGIAAPYGIAAPYTAYGAYGV-APYGL 440
AP+G+ PYG + P + YG PYGL
Sbjct: 1449 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1477
>SB_2691| Best HMM Match : Luteo_Vpg (HMM E-Value=2.1)
Length = 332
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 428 GDAVSAISGVGRGDSVRCGDAIGGSDQG-RGEVGS 327
GDA I GD + D IGG D+G RG +G+
Sbjct: 173 GDASVVIGSDESGDYITADDDIGGEDEGSRGAIGN 207
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = +3
Query: 357 APYGIAAPYGIAAPYTAYGAYGV-APYGLG 443
APY PY I PY Y APY G
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPYNTGAPYSTG 1364
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Frame = +3
Query: 360 PYGIAAPYGIAAPYTAYGAYGVA-PYGLG 443
PY I PY APY Y PY G
Sbjct: 1342 PYNIGVPYNTGAPYNTGAPYSTGEPYRTG 1370
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 452 SVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 339
+ DA G +A +G G+G G + GG +GRG
Sbjct: 1343 NADAVGAAGSDAAAATGSGKGPEGILGQSPGGRGRGRG 1380
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = -3
Query: 446 DAEAVGGDAVSA--ISGVGRGDSVRCGDAIGGSDQGRGEVG 330
D + G D V + G GD CGD GG D G + G
Sbjct: 10 DGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGGDDDGGDDDG 50
>SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2)
Length = 127
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 467 VIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 330
VIG +D +GG I G GD V G +GGS G G +G
Sbjct: 70 VIGGGVMDDSVMGG---GVIGGSVMGDGVMGGGVMGGSVMGGGVMG 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,520,069
Number of Sequences: 59808
Number of extensions: 171063
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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