Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0477
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    26   0.24 
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    26   0.24 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.9  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 277 WRPKFYNSSDNLPKDMPEDLKEHI 348
           W+   ++  DNLPKD  +  +EH+
Sbjct: 21  WQRLSFDDEDNLPKDPRQWTREHV 44


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 277 WRPKFYNSSDNLPKDMPEDLKEHI 348
           W+   ++  DNLPKD  +  +EH+
Sbjct: 21  WQRLSFDDEDNLPKDPRQWTREHV 44


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 430 NIGPIQYLPHRGFPGYYFPYTNQEGYLS 513
           N  P  Y+      G   PYTN  G+L+
Sbjct: 281 NYNPGTYINKEAGGGSPGPYTNATGFLA 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,372
Number of Sequences: 336
Number of extensions: 4073
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)