Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0477
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    28   1.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   4.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   4.2  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   5.6  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   7.4  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   7.4  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +1

Query: 316  KDMPEDLKEHIRNMTAYDKNYLNMVWVSCQGENP----ADRENIG--PIQY 450
            KD  +DL +H   +TAYD N  N +  + + EN     +D  N G  P++Y
Sbjct: 1103 KDSMKDLVQHAFTITAYDSNIHNALTRAFKHENGDLHISDLRNTGLFPLRY 1153


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
 Frame = +1

Query: 343 HIRNMTAYDKNYLNMVWVSCQGENPADRENIGPIQYL------PHRGFPGYYF----PYT 492
           H+R   + + N+ N  + + +G+ P+D +   P   +      P    P +      P T
Sbjct: 103 HVRFQHSINANHANQNYYTAKGDLPSDEKITKPFDAIGILIRHPGSAIPAHTMWVVNPAT 162

Query: 493 NQEGYLSPLV 522
           N  G +SPLV
Sbjct: 163 NSLGSVSPLV 172


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 334 LKEHIRNMTAYDKNYLNMVWVSCQGENPADRENIGPIQYLPH 459
           L EH+RN +  DK Y     + C  +NP   + + PI Y P+
Sbjct: 304 LAEHLRNESLLDKGY----QLPCFAKNPVTGKAL-PIFYAPY 340


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 124 NIHN---CDFKLPPPAGKVCDVDISAWGPCVQDNYFGYHKST 240
           N+HN   C+F  P   G +   DI+    CV  + F  H ST
Sbjct: 165 NLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHHST 206


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 445 VWDQCSRDQLGSR 407
           +WD CSRDQ+  R
Sbjct: 158 IWDACSRDQIEQR 170


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 241 PCIFLKLNKIYGWRPKFYNSSDNLPKDMPEDL 336
           P + +  +   G  PKF+NS+DN     PE+L
Sbjct: 382 PSVHMNSHIAKGELPKFHNSTDNPFLTPPEEL 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,038
Number of Sequences: 5004
Number of extensions: 62585
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)