Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0477
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 30 1.4
11_01_0366 + 2793732-2793838,2793944-2794979 30 1.4
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 30 1.4
09_01_0027 - 469856-470773,470780-471261,471296-471408,471453-47... 29 2.5
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 29 2.5
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 3.3
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046... 29 3.3
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 4.4
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 29 4.4
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 28 5.8
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 28 5.8
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 396 FLPRREPS*SREHWSHTVPTSPRLPGILLPLHQPRRIPEP 515
+ PRR PS R+H P SP +P + PRR P P
Sbjct: 114 YRPRRTPSPGRDHRIRRTP-SPYRDRRRIPDYHPRRTPSP 152
>11_01_0366 + 2793732-2793838,2793944-2794979
Length = 380
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 386 WFGFPAKARTQLIARTLVPYSTYLTEA 466
W AK +ART++P+S YLT+A
Sbjct: 44 WANLRAKMDPAAVARTVIPHSEYLTQA 70
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +1
Query: 388 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 567
V++ QG + + + Y+ PGY + + G ++ LV V ++N+
Sbjct: 441 VYLGSQGALDVEGSELPRLVYVSREKRPGYN--HHKKAGAMNSLVRVSAVLTNAPFILNL 498
Query: 568 ECRAWANNIKYERLEAM 618
+C + NN K R EAM
Sbjct: 499 DCDHYVNNSKAVR-EAM 514
>09_01_0027 -
469856-470773,470780-471261,471296-471408,471453-472003,
472089-472328
Length = 767
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 529 AQLQEGSGILLGWCRGSSIPGSLGEVGTVWDQCSRDQLGSRLGRKPKPCLG 377
A+ + G +L W + +P + + T + Q S+ LG+ R P C G
Sbjct: 687 AEYEHGKALLPEWAL-NEVPWEMKRLHTFYMQASKKGLGNITARSPADCFG 736
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 529 AQLQEGSGILLGWCRGSSIPGSLGEVGTVWDQCSRDQLGSRLGRKPKPCLG 377
A+ + G +L W + +P + + T + Q S+ LG+ R P C G
Sbjct: 632 AEYEHGKALLPEWAL-NEVPWEMKRLHTFYMQASKKGLGNITARSPADCFG 681
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 412 NPADRENIGPIQYLP---HRGFPGYYFPYTNQEGYLSPLVAVHLQRPKT 549
N +DR + P YLP H P Y +Q Y+ PL A H P++
Sbjct: 427 NDSDRHPVPPAVYLPPASHPSQPAAYVHQQHQTSYIPPLTA-HPMPPES 474
>01_03_0230 -
14004159-14004344,14004422-14004514,14004613-14004673,
14004761-14004874,14004955-14005206,14005293-14007037
Length = 816
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 532 SAQLQEGSGILLGWCRGSSIPGSLGEVGTVWDQCSRDQLGSRLGRKPKPCLG 377
+A+ + G +LL W + + + T + Q S+ LG+ R P C G
Sbjct: 503 AAEYEHGKALLLEWALNKGL-WEMKRLHTFYMQASKKGLGNITARSPADCFG 553
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 289 TWASNRRSYLASGRCRVSICGSRNSCPA 206
TWA RRS L GR G+R SC A
Sbjct: 50 TWAVPRRSRLEWGRVEAQNSGARTSCRA 77
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 355 MTAYDKNYLNMVWVSCQGENPADRE-NIGP-IQYLPHRGFPGYYFPYTNQEGYLSPLVAV 528
MT+ + + V + + +N D + N+ P + Y+ P Y+ + + G L+ L+ V
Sbjct: 111 MTSKNHQPIVQVLIDGKSQNAVDDDGNVLPTLVYMAREKSPQYHHNF--KAGALNALIRV 168
Query: 529 HLQRPKTGMLINIECRAWANN 591
+ +++N++C ++NN
Sbjct: 169 SALISDSPVILNVDCDMYSNN 189
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 520 QEGSGILLGWCRGSSIPGSLGEVGTVWDQC 431
Q G+G +L P LG +G VWDQC
Sbjct: 77 QTGAGAVLS-VLSFPYPSVLGTIGLVWDQC 105
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 388 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 567
V++ G D + + Y+ PGY + + G ++ LV V ++N+
Sbjct: 415 VFLGETGARDFDGNELPRLVYVSREKRPGYQ--HHKKAGAMNALVRVSAVLTNAPYILNL 472
Query: 568 ECRAWANNIKYERLEAM 618
+C + NN K R EAM
Sbjct: 473 DCDHYVNNSKAVR-EAM 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,507,999
Number of Sequences: 37544
Number of extensions: 485943
Number of successful extensions: 1412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -