Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0477
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)                33   0.21 
SB_58281| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_13885| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)                 30   1.9  
SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)                   29   4.5  
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 151 PPPAGKVCDVDISAWGPCVQDNY---FGYHKSTPCIFLKLNKIYGWRPK 288
           P  A K C  D++  GPC ++     +G+   +PC FL++NK++ + P+
Sbjct: 150 PKDAKKQCRFDLTNLGPCYKNETGFKYGFDTGSPCFFLRMNKVFNFVPE 198


>SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)
          Length = 352

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 2/136 (1%)
 Frame = +1

Query: 193 WGPCVQDNYFGYHK-STPCIFLKLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYD 369
           W P      +G     TP +  +L + Y W P  +N +   P      ++ H+ N   ++
Sbjct: 123 WNPIYGTPTYGTRTYGTPRMNPQLMEPYVWNPNLWNPTYETPTYGTPSMEPHVWNPNVWN 182

Query: 370 KNYLNMVWVSCQGENPA-DRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPK 546
            N  N+ + +   E P       G  +  P    P  + P      Y +P       R  
Sbjct: 183 PNLWNLTYGTLSIETPTYGTRTYGTPRMNPELMEPHVWNPNLWNPTYGTPTYGTLTHRAP 242

Query: 547 TGMLINIECRAWANNI 594
           T     +E   W  N+
Sbjct: 243 TYGTSRMEPHLWNPNL 258


>SB_58281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 256 KLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYLNMVWVS 399
           KL  +YG+R KF  S  N  K + ++  E I N  AY   YL++  VS
Sbjct: 15  KLRILYGFRTKFCGSPSNSTKCVIDEGDEIICNSAAYLMQYLDIQGVS 62


>SB_13885| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)
          Length = 418

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 205 VQDNYFGY--HKSTPCIFLKLNKIYGWRP 285
           VQ+NY G    KS+P  FLK++  YG+ P
Sbjct: 123 VQNNYTGCVGTKSSPSTFLKISSFYGYMP 151


>SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 454 PHRGFPGYYFPYTNQEGYLSPLVAVHLQRP 543
           PH G PGYY P+  +  Y+ P +  +L+ P
Sbjct: 220 PHIGAPGYYSPHLLRH-YIHPAMVPYLKGP 248


>SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)
          Length = 964

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 225 AEIVVLHARSPRADVYIADFPSRRRKLEVTVVDVLARTS--FFAIALVRSKKVDS 67
           +E  V H+ S   + YIADF  R +       D+LA     +F  AL RS + DS
Sbjct: 741 SEDKVFHSASDALEAYIADFEKRTQLYSRRPSDLLAPKPKYYFMDALERSLRGDS 795


>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 117  RTSFFAIALVRSKKVDSFLTQNCWLPGSFPL 25
            +T+F+A+A +    V++F    CW PG+F L
Sbjct: 940  QTAFYAVAAL----VNAFRIPECWAPGTFDL 966


>SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 453 TSPRLPGILLPLHQPRRIPEPSCSCALAET*DW 551
           +SP +P  LLP ++   +P  +  CAL +  DW
Sbjct: 38  SSPEMPAKLLPQYRALHVPRNAKICALKDA-DW 69


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 175 DVDISAWGPCVQDNYFGYHKSTPCIFLKLNKIYGWRPKFYNSSDNL 312
           D D   W P   + + G +  T  +    ++   WRPKF+NS D +
Sbjct: 336 DADFVIWDP--NEEFMGLYDVTTTL---RDRHDAWRPKFHNSFDEI 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,854,090
Number of Sequences: 59808
Number of extensions: 523073
Number of successful extensions: 1492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)