Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0477
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical pr... 93 2e-19
Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U80029-6|AAB37586.1| 199|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80030-3|AAG24160.2| 367|Caenorhabditis elegans Serpentine rece... 29 2.2
Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical p... 29 3.0
AL132895-4|CAC14401.1| 333|Caenorhabditis elegans Hypothetical ... 29 3.0
Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical p... 28 5.2
AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical ... 28 6.8
AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical ... 28 6.8
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 28 6.8
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 28 6.8
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 9.1
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 9.1
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 9.1
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 9.1
U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl transfe... 27 9.1
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 9.1
AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans alpha1,3-fuco... 27 9.1
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 9.1
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 9.1
>Z81037-5|CAB02752.1| 320|Caenorhabditis elegans Hypothetical
protein C17E4.9 protein.
Length = 320
Score = 105 bits (253), Expect = 2e-23
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 1/183 (0%)
Frame = +1
Query: 103 KKAGAGQNIHNCDFKLPPPAGKVCDVDISAWGP-CVQDNYFGYHKSTPCIFLKLNKIYGW 279
++ GAG + N D + P A C D+S + C + + FGY PC+ + LN++ GW
Sbjct: 145 RECGAGDS--NDDLEKNPDA-LPCRFDLSVFDKGCSEKSDFGYKSGKPCVIISLNRLIGW 201
Query: 280 RPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYLNMVWVSCQGENPADRENIGPIQYLPH 459
RP Y + +PE++K D+ + ++C+G D+E+IG + Y+P
Sbjct: 202 RPTDYQENS-----VPEEVK---------DRYKAGSIAINCRGATNVDQEHIGKVTYMPS 247
Query: 460 RGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIECRAWANNIKYERLEAMGSVHIEM 639
G G Y+PY +GY P+ V L+ +ECRA+A NI+++ +G V+ E+
Sbjct: 248 NGIDGRYYPYVFTKGYQQPIAMVKFDTIPRNKLVIVECRAYALNIEHDISSRLGMVYFEV 307
Query: 640 LIE 648
++E
Sbjct: 308 MVE 310
>Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical
protein F55F3.3 protein.
Length = 317
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/149 (28%), Positives = 76/149 (51%)
Frame = +1
Query: 202 CVQDNYFGYHKSTPCIFLKLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYL 381
C + +GY PC+ + LN++ GWRP Y+ +PE++K +
Sbjct: 173 CGAKDQYGYKSGKPCVAVSLNRLIGWRPVNYDDGS-----VPEEIKGRYKP--------- 218
Query: 382 NMVWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLI 561
+ ++C+G D+E++G ++Y+P G G Y+PY Y P+ V L+
Sbjct: 219 GSITINCEGATSFDKEHLGKVKYIPETGIDGRYYPYVFVPSYQQPIAMVKFDTIPRNKLV 278
Query: 562 NIECRAWANNIKYERLEAMGSVHIEMLIE 648
+ECRA+A+NI+++ +G V+ E+ +E
Sbjct: 279 IVECRAYASNIEHDISTRLGMVYFELFVE 307
>Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical
protein C43F9.6 protein.
Length = 374
Score = 52.4 bits (120), Expect = 3e-07
Identities = 42/118 (35%), Positives = 47/118 (39%)
Frame = +1
Query: 220 FGYHKSTPCIFLKLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYLNMVWVS 399
FGY K PCI LKLNKI GW P + S N K DL + +
Sbjct: 242 FGYSKGQPCIMLKLNKIVGWVPNL-SPSKNKTKCPSGDL--------CCGQG----IKFK 288
Query: 400 CQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIEC 573
C AD + +Y P G P YFPY NQ GY P V L IEC
Sbjct: 289 CTSN--ADVK----FEYFPKTGIPTCYFPYANQGGYEQPYQMVKLTNITVNRETTIEC 340
>U80029-6|AAB37586.1| 199|Caenorhabditis elegans Hypothetical
protein T20D4.11 protein.
Length = 199
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 277 WRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYLNMVWVSCQG 408
W+P FY+ ++ P PE+++E +NM D ++V +C G
Sbjct: 135 WKP-FYDLNEVGPDTTPEEMEELCKNMLGKDNCMKDLVGRTCGG 177
>U80030-3|AAG24160.2| 367|Caenorhabditis elegans Serpentine
receptor, class w protein115 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 212 SCTQGPHALMSTSQTFPAGGGSLKSQLWMF 123
SC +GPH + + S F A G L ++F
Sbjct: 193 SCAKGPHHIFAVSDLFTANDGFLAKYFYLF 222
>Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical
protein ZK1098.3 protein.
Length = 784
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 244 CIFLKLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYL 381
CI+ + + W Y++ D K MP DLKE + N T KN L
Sbjct: 349 CIYERRIEALFWAT--YSNIDRNSKYMPPDLKEELENPTTEMKNGL 392
>AL132895-4|CAC14401.1| 333|Caenorhabditis elegans Hypothetical
protein Y59A8A.4 protein.
Length = 333
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 457 HRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIECRA 579
H+GF + ++ G LS L+ ++LQ P ++ I C++
Sbjct: 270 HQGFNNVVYICSSLHGVLSTLIMIYLQNPYRAVVKRIFCQS 310
>Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical
protein T26H2.7 protein.
Length = 659
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = -1
Query: 523 LQEGSGILLGWCRGSSIPGSLG--EVGTVWDQCSRDQLGSRLGRKPKPCL-GSSY 368
+ EG G LGWCR + + G L +G W G K L GS+Y
Sbjct: 411 IYEGVGTPLGWCRHTGLHGKLKIMTIGNSWTANHAKMFYQECGFLAKSILQGSAY 465
>AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical
protein Y87G2A.8b protein.
Length = 586
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 451 GTVWDQCSRDQLGSRLGRK 395
G +WD CS DQ G LG++
Sbjct: 535 GIIWDICSYDQWGVELGKQ 553
>AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical
protein Y87G2A.8a protein.
Length = 551
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 451 GTVWDQCSRDQLGSRLGRK 395
G +WD CS DQ G LG++
Sbjct: 500 GIIWDICSYDQWGVELGKQ 518
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 454 PHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIECRAWANNIKYERLEAMGSV 627
PH+ + +PY Q+ SP P M N+ C A+ ++I +++ E MGS+
Sbjct: 294 PHQQWTPQGYPYGYQQNPNSP------PNPALMMDANLPCSAFTDDICHQQREQMGSL 345
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 454 PHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINIECRAWANNIKYERLEAMGSV 627
PH+ + +PY Q+ SP P M N+ C A+ ++I +++ E MGS+
Sbjct: 316 PHQQWTPQGYPYGYQQNPNSP------PNPALMMDANLPCSAFTDDICHQQREQMGSL 367
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 454 VGTVWDQCSRDQLGSRLGRKPKPCL 380
VG+V D C RD + G+KP C+
Sbjct: 428 VGSVSDACVRDDQSAENGQKPGDCI 452
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 447 VPTSPRLPGILLPLHQPRRIPEPSCSCALAET*DWHVNQH 566
+P P++P + PLHQ + PSCS +H N H
Sbjct: 347 IPQMPQMPQMPPPLHQGYGMNGPSCSS--ENNNPFHQNHH 384
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 447 VPTSPRLPGILLPLHQPRRIPEPSCSCALAET*DWHVNQH 566
+P P++P + PLHQ + PSCS +H N H
Sbjct: 443 IPQMPQMPQMPPPLHQGYGMNGPSCSS--ENNNPFHQNHH 480
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 447 VPTSPRLPGILLPLHQPRRIPEPSCSCALAET*DWHVNQH 566
+P P++P + PLHQ + PSCS +H N H
Sbjct: 415 IPQMPQMPQMPPPLHQGYGMNGPSCSS--ENNNPFHQNHH 452
>U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl
transferase protein 5 protein.
Length = 378
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +1
Query: 88 YKRDGKKAGAGQNIHNCDFKLPPPAGKVCDVDISAWGPCVQDNYF---GYHKSTPCIFL- 255
YK++ + + CD K P + S V + ++ G +K+ P +
Sbjct: 217 YKKEPAECPRRRGPPGCDVKFHSPYKFAIAFENSNCKDYVTEKFWKKAGIYKTVPIVMSR 276
Query: 256 KLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYL 381
K+ + G Y + D+ P E+ HI+N+T+ ++ Y+
Sbjct: 277 KIYRDLGIPDSMYIAVDDYPN--LEEFVHHIQNVTSNEEEYM 316
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 454 VGTVWDQCSRDQLGSRLGRKPKPCL 380
VG+V D C RD + G+KP C+
Sbjct: 428 VGSVSDACVRDDQSAENGQKPGDCI 452
>AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans
alpha1,3-fucosyltransferase homologueprotein.
Length = 378
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +1
Query: 88 YKRDGKKAGAGQNIHNCDFKLPPPAGKVCDVDISAWGPCVQDNYF---GYHKSTPCIFL- 255
YK++ + + CD K P + S V + ++ G +K+ P +
Sbjct: 217 YKKEPAECPRRRGPPGCDVKFHSPYKFAIAFENSNCKDYVTEKFWKKAGIYKTVPIVMSR 276
Query: 256 KLNKIYGWRPKFYNSSDNLPKDMPEDLKEHIRNMTAYDKNYL 381
K+ + G Y + D+ P E+ HI+N+T+ ++ Y+
Sbjct: 277 KIYRDLGIPDSMYIAVDDYPN--LEEFVHHIQNVTSNEEEYM 316
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 454 VGTVWDQCSRDQLGSRLGRKPKPCL 380
VG+V D C RD + G+KP C+
Sbjct: 428 VGSVSDACVRDDQSAENGQKPGDCI 452
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 447 VPTSPRLPGILLPLHQPRRIPEPSCSCALAET*DWHVNQH 566
+P P++P + PLHQ + PSCS +H N H
Sbjct: 347 IPQMPQMPQMPPPLHQGYGMNGPSCSS--ENNNPFHQNHH 384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,422,384
Number of Sequences: 27780
Number of extensions: 374151
Number of successful extensions: 901
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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