Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0477
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.65 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.86 
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   2.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.0  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 560 STLNVVPGRTTSSMRDLKPW 619
           STLNV+ G+T    R LKP+
Sbjct: 89  STLNVISGKTGKGGRLLKPY 108


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 170 SAM*TSARGDLACRTTISATTNRHPASS*S*IRSTVG 280
           +A+  +  GD +CR T S   N  PAS+   +  T+G
Sbjct: 136 AAVDAATAGDKSCRYTASLAGNVAPASADPMVNYTLG 172


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/17 (41%), Positives = 7/17 (41%)
 Frame = -1

Query: 133 CGCSGPHQLFCHRACTQ 83
           C C  P    C R C Q
Sbjct: 28  CNCKAPETALCARRCQQ 44


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 429 EHWSHTVPTSPRLPGILLPLHQPRRI 506
           E W  T PT+P  P ++ P    RRI
Sbjct: 442 ERW--TTPTTPHSPLLVAPFGAGRRI 465


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 107 FLPSRLYAVRRWIAF 63
           ++PS L  V  WIAF
Sbjct: 221 YIPSALIVVMSWIAF 235


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 191 ALMSTSQTFPAGGGSLKS 138
           A+ STS ++P GG S  S
Sbjct: 75  AITSTSPSYPGGGSSSPS 92


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 460 RGFPGYYFPYTNQEGYLSPLV 522
           +GFPG   PYT  +  L  LV
Sbjct: 27  QGFPGKNSPYTVTQAILIALV 47


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 644 INISMCTEPMASSLSYLM 591
           + IS  TEP +S+ SY++
Sbjct: 191 VEISQMTEPSSSTKSYVL 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,921
Number of Sequences: 438
Number of extensions: 5031
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)