Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0477
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12340.1 68417.m01952 expressed protein                             29   3.7  
At5g52610.1 68418.m06532 F-box family protein contains F-box dom...    28   4.9  
At3g56480.1 68416.m06281 myosin heavy chain-related contains wea...    28   4.9  
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ...    28   6.4  
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (...    28   6.4  
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff...    28   6.4  
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD...    27   8.5  
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD...    27   8.5  
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica...    27   8.5  
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ...    27   8.5  
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai...    27   8.5  

>At4g12340.1 68417.m01952 expressed protein
          Length = 170

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 121 QNIHNCDFKLPPPAGKVCDVDISAWGPCVQDN 216
           +++   +FK+P P    C  D  AW  C ++N
Sbjct: 109 KDLREKEFKIPEPKPMPCSSDHEAWMKCYKEN 140


>At5g52610.1 68418.m06532 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 351

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 376 YLNMVWVSCQGENPADRENIGPIQYLPHRGFPGYYFPY 489
           Y++ +W+S    NPA R+ +   Q  PH+ F  +Y  Y
Sbjct: 102 YMSQLWIS----NPATRKGVLVPQSAPHQKFRKWYMGY 135


>At3g56480.1 68416.m06281 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, cardiac muscle alpha
           isoform (MyHC-alpha) (Alpha isomyosin) (Fragment)
           (Swiss-Prot:P04460) [Oryctolagus cuniculus]
          Length = 490

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 47  QQFWVKKLSTFLLRTSAMAKKLV 115
           ++F VKKL  FL +TS  AKKLV
Sbjct: 155 EKFEVKKLGNFLKQTSEDAKKLV 177


>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit (Ath-A), Arabidopsis thaliana
          Length = 1084

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +1

Query: 388 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 567
           V++   G    +   +  + Y+     PG  F +  + G ++ L+ V         L+N+
Sbjct: 504 VFLGSDGVRDVENNELPRLVYVSREKRPG--FDHHKKAGAMNSLIRVSGVLSNAPYLLNV 561

Query: 568 ECRAWANNIKYERLEAM 618
           +C  + NN K  R EAM
Sbjct: 562 DCDHYINNSKALR-EAM 577


>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
           (Ath-A) identical to gi:2827141
          Length = 1084

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +1

Query: 388 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 567
           V++   G    D   +  + Y+     PG  F +  + G ++ L+ V         L+N+
Sbjct: 505 VFLGHSGVRDTDGNELPRLVYVSREKRPG--FDHHKKAGAMNSLIRVSAVLSNAPYLLNV 562

Query: 568 ECRAWANNIK 597
           +C  + NN K
Sbjct: 563 DCDHYINNSK 572


>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1939

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 262  NKIYGWRPKFYNSSDNLPKDMPEDLKEHIR 351
            N ++G      N S+NLPK+ P+  K+H R
Sbjct: 1714 NYMFGENVMEQNHSENLPKNFPKPDKQHSR 1743


>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 279

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 629 CTEPMASSLSYLMLFAQARHSMLINMPVLGLCKCTATRGLRYPSWL 492
           C++    ++S +M      H + +N    GL K   T+GL    WL
Sbjct: 177 CSKGGVDTMSRMMALELGVHKIRVNSIAPGLFKSEITQGLMQKEWL 222


>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 280

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 629 CTEPMASSLSYLMLFAQARHSMLINMPVLGLCKCTATRGLRYPSWL 492
           C++    ++S +M      H + +N    GL K   T+GL    WL
Sbjct: 178 CSKGGVDTMSRMMALELGVHKIRVNSIAPGLFKSEITQGLMQKEWL 223


>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
           to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
           thaliana)
          Length = 616

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
 Frame = +1

Query: 130 HNCDFKLPPPAGKVCDVDISAWGPCVQDNY----FGYHKSTPCIFLKLNKIYGWRPKFYN 297
           H      P P   V  +  SA  P V ++     + ++K++PC+  K + I     K +N
Sbjct: 445 HGMAMSDPEPEINVYQIASSAINPLVFEDLAELLYNHYKTSPCMDSKGDPIMVRLMKLFN 504

Query: 298 SSDNLPKDMPEDLKEH---IRNMTAYDKNYLNMVWVSCQ 405
           S D+    +  D +E    +  M++ D   +  +   C+
Sbjct: 505 SVDDFSDHLWRDAQERSGLMSGMSSVDSKMMQKLKFICK 543


>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit, Arabidopsis thaliana (Ath-A)
          Length = 1088

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +1

Query: 388 VWVSCQGENPADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSPLVAVHLQRPKTGMLINI 567
           V++   G    D   +  + Y+     PG  F +  + G ++ L+ V         L+N+
Sbjct: 510 VFLGHSGVCDMDGNELPRLVYVSREKRPG--FDHHKKAGAMNSLIRVSAVLSNAPYLLNV 567

Query: 568 ECRAWANNIKYERLEAM 618
           +C  + NN K  R EAM
Sbjct: 568 DCDHYINNSKAIR-EAM 583


>At1g44910.1 68414.m05146 FF domain-containing protein / WW
           domain-containing protein contains Pfam profiles
           PF01846: FF domain, PF00397: WW domain
          Length = 946

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 295 NSSDNLPKDMPEDLKEHIRNMTAYDKNYL 381
           N+S + PKD+ ED+ E +      DK+Y+
Sbjct: 655 NTSGSTPKDLFEDVTEELEKQYHEDKSYV 683


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,721,424
Number of Sequences: 28952
Number of extensions: 358303
Number of successful extensions: 924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)