Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0474
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 360 e-100
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 360 e-100
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 302 1e-82
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 268 4e-72
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 179 2e-45
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 1e-26
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 103 1e-22
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 6e-04
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.84
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 29 2.6
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 2.6
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 29 3.4
SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9) 29 3.4
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 3.4
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 4.5
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.9
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05) 28 7.9
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2) 28 7.9
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 360 bits (886), Expect = e-100
Identities = 170/203 (83%), Positives = 185/203 (91%)
Frame = +1
Query: 64 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 243
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 244 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 423
MNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+S
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 424 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 603
SMVLTKMKETAEAYLG V +AV+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAA
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAA 180
Query: 604 IAYGLDKKGTGERNVLIFDLGGG 672
IAYGLDKK ERNVLI+DLGGG
Sbjct: 181 IAYGLDKKVGVERNVLIYDLGGG 203
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 360 bits (885), Expect = e-100
Identities = 168/203 (82%), Positives = 188/203 (92%)
Frame = +1
Query: 64 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 243
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 244 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 423
+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+S
Sbjct: 61 LNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEIS 120
Query: 424 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 603
SMVL KMKETAEAYLG+ V +AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA
Sbjct: 121 SMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAA 180
Query: 604 IAYGLDKKGTGERNVLIFDLGGG 672
+AYGLDK +GE+NVLIFDLGGG
Sbjct: 181 LAYGLDKSLSGEKNVLIFDLGGG 203
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 302 bits (742), Expect = 1e-82
Identities = 144/198 (72%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +1
Query: 82 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPNN 258
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ NP N
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPEN 763
Query: 259 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 438
T+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+MVLT
Sbjct: 764 TVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLT 823
Query: 439 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 618
KMKETAEAYLGK V +AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+
Sbjct: 824 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGM 883
Query: 619 DKKGTGERNVLIFDLGGG 672
DKK GE+N+L+FDLGGG
Sbjct: 884 DKK-EGEKNILVFDLGGG 900
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 268 bits (656), Expect = 4e-72
Identities = 136/187 (72%), Positives = 147/187 (78%), Gaps = 25/187 (13%)
Frame = +1
Query: 64 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 243
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 244 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV- 420
MNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 421 ------------------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQR 528
SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQR
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQR 180
Query: 529 QATKDAG 549
QATKDAG
Sbjct: 181 QATKDAG 187
Score = 149 bits (362), Expect = 2e-36
Identities = 74/86 (86%), Positives = 78/86 (90%)
Frame = +1
Query: 415 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPT 594
++SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 595 AAAIAYGLDKKGTGERNVLIFDLGGG 672
AAAIAYGLDKK ERNVLIFDLGGG
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGG 296
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 179 bits (435), Expect = 2e-45
Identities = 94/204 (46%), Positives = 128/204 (62%), Gaps = 3/204 (1%)
Frame = +1
Query: 70 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 243
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 244 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEV 420
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 421 SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAA 600
V+ K++ AE L TV AV++VPA F+ QR AT A +++G+ VLR+INEPTAA
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAA 209
Query: 601 AIAYGLDKKGTGERNVLIFDLGGG 672
A+AYGL KK G NV++ DLGGG
Sbjct: 210 ALAYGLHKK-EGVANVMVVDLGGG 232
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 116 bits (280), Expect = 1e-26
Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Frame = +1
Query: 247 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 423
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 424 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 603
+M+ T++K TAE L V + VI+VP+Y+ D QR+ DA +GLN LR++N+ TA +
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVS 237
Query: 604 IAYGLDKKG---TGERNVLIFDLG 666
+AYG+ K+ RNV+ D+G
Sbjct: 238 LAYGIYKQDLPTDKPRNVVFVDIG 261
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 82 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 237
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 103 bits (248), Expect = 1e-22
Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 26/118 (22%)
Frame = +1
Query: 370 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 549
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND+QRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 550 TISGLN------------------------VLRIINEPTAAAIAYGLDKK--GTGERN 645
TI+GL+ VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Frame = +1
Query: 364 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 543
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 544 AGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLG 666
A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMG 171
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 133 GKVEIIANDQGNRTTPSYVAFTDTERLI 216
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 142 EIIANDQGNRTTPSYVAFT-DTERL 213
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 150 RQRPGQQDHSVLCCVHRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASR 320
RQ + +++ H R +R+ ++ GG +EP + R T T C+CA R
Sbjct: 267 RQSAPSRSMAIINKTHGKRHGYRKLSRDCGGRRPNEPYERTARVHTILSTDTETCFCAKR 326
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 250 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 152
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
Length = 420
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 268 RILCCWGSSPPGSWRH 221
R++CC G SP WRH
Sbjct: 395 RVVCCQGDSPSPRWRH 410
>SB_58645| Best HMM Match : Kelch_1 (HMM E-Value=1.9)
Length = 340
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 268 RILCCWGSSPPGSWRH 221
R++CC G SP WRH
Sbjct: 170 RVVCCQGDSPSPRWRH 185
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Frame = +1
Query: 430 VLTKMKETAEAYLGKT----------VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRI 579
V K T+E Y+G T + NA +T+P YF + +K G G+ +
Sbjct: 994 VTRKDNNTSETYVGLTENSFKTRRNKIYNAPLTLPPYFWCHPSRKSKKDGAKEGMAM--A 1051
Query: 580 INEPTAAAIAYGLDKKGTG 636
+++ I+Y LD+K TG
Sbjct: 1052 MSKERNQEISYKLDRKWTG 1070
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 10 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 96
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -3
Query: 458 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 279
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 278 RLASNIVL 255
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 654 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 568
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
Length = 1264
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 195 HRHRASHRRCRQEPGG---DEPQQHNIRCQTSHRT*VRRCYCASRHEALA 335
H R +R+ + GG +EP + R T T C+CA R+ + A
Sbjct: 421 HGERHGYRKLSRVCGGRRPNEPYERTARVHTILSTDTETCFCAKRYGSAA 470
>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
Length = 451
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 332 QCFMSACTVASSNLRPMRRLASNIVLLGFIATWFLAASPMRRSVSVNAT 186
QCF+S C + S + + R+ L TW + + M S +AT
Sbjct: 169 QCFLSVCDLCCSLMTQIPRMRHTWDFLEHAPTWISSQTSMSFSAITDAT 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,730,419
Number of Sequences: 59808
Number of extensions: 525865
Number of successful extensions: 1515
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -