Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0474
         (673 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein...   116   7e-28
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.8  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    23   8.8  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   8.8  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    23   8.8  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    23   8.8  

>AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein 70
           protein.
          Length = 78

 Score =  116 bits (279), Expect = 7e-28
 Identities = 55/63 (87%), Positives = 59/63 (93%)
 Frame = +1

Query: 484 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 663
           +AVITVPAYFNDSQRQATKDAG I+GLNV+RIINEPTAAA+AYGLDK   GERNVLIFDL
Sbjct: 1   DAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLDKNLKGERNVLIFDL 60

Query: 664 GGG 672
           GGG
Sbjct: 61  GGG 63


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 63   NGKSTRSRNRSGYHVLLRWCLPAREGGDHR--QRPG 164
            +GK  RS +   +++LL    P REG  H+  Q PG
Sbjct: 1802 DGKYKRSYSYEPHNLLLSNLFPPREGFHHKAVQLPG 1837


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 474 NCAECSYHGSRVLQ*LSKTSHKR-CRY 551
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 474 NCAECSYHGSRVLQ*LSKTSHKR-CRY 551
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 474 NCAECSYHGSRVLQ*LSKTSHKR-CRY 551
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +3

Query: 474 NCAECSYHGSRVLQ*LSKTSHKR-CRY 551
           NCA C  HG ++        HKR C+Y
Sbjct: 40  NCARCRNHGLKI----GLKGHKRYCKY 62


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,513
Number of Sequences: 2352
Number of extensions: 16406
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)