Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0473
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.15 
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   7.4  
SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)                 28   7.4  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.8  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   27   9.8  

>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 205 SMVRFQS*SRLSSVCSPVVHQLSSRRDSRLCVSSSSPSAHL*GPEPGQ 62
           S +  +S S  SSVC  V+H+LS+ R   +C S     A+   P  GQ
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAPLDGQ 477


>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 301 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 429
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -1

Query: 420 SVLRVFLVVAFHVIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 241
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 240 LR 235
           ++
Sbjct: 84  IK 85


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +1

Query: 241 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 369
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_24758| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-10)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 153 LFISFRLG--ETVGSVFLQVLLLLICEGLSQDNADDEHDK 40
           LF++F  G  E VG  F+     L CE    D  DD+H++
Sbjct: 305 LFLAFNRGYRELVGRAFIYTCCTL-CEIAEDDENDDDHER 343


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 10   RIRHEGIMKTFIVFVVCV-VLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFK 186
            R RH   M++F   V     +AQA+  EQK+ +  H+   LA   A +Q +    T + +
Sbjct: 4213 RDRHVYYMRSFRSLVARAGQIAQAICSEQKKEIDLHKRMRLARPPAPQQPIISQDTNEVE 4272

Query: 187  T 189
            +
Sbjct: 4273 S 4273


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 250 KDGKFKKDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK 414
           K+G+ +K+    K  N E ++KVE+    CLA   + P +TA       ++ +PK
Sbjct: 152 KEGEMEKEYPSCKFANRESEVKVER---TCLA---SLPVRTATTTTMVQNQDEPK 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,429
Number of Sequences: 59808
Number of extensions: 370169
Number of successful extensions: 1079
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)