Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0469
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0894 + 7047273-7048277,7049124-7049549 35 0.057
03_01_0283 + 2193632-2195182 29 3.8
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 5.0
01_01_0094 - 730484-731570,732030-732715 28 5.0
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 6.6
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 6.6
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 8.7
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 27 8.7
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 27 8.7
01_01_0097 - 741881-742977,743100-743320,743438-744156 27 8.7
>01_01_0894 + 7047273-7048277,7049124-7049549
Length = 476
Score = 34.7 bits (76), Expect = 0.057
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = -2
Query: 350 GFRLPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPA 183
G+RLP PPS R PF+ H LG+L R + A PV+L G + TV+ S A
Sbjct: 43 GWRLPLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSA 98
Query: 182 SSFE*AGVLTHLKFENRLR 126
+S + A F +R R
Sbjct: 99 ASAQEAMRARDAAFASRAR 117
>03_01_0283 + 2193632-2195182
Length = 516
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 162 SSHPFKV*E*VEVVSAPMPLIIRFTG*DCFKILYRRQL-S*GKLRTEPATRWFDY 1
S H K + V V S M + G DC + L R + S GKLR EP+ ++F +
Sbjct: 397 SGHEMKAGDKVLVFSYSMGRMEGVWGKDCTEFLPERWITSEGKLRYEPSYKFFSF 451
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 226 LPKLAHLAPSSDLRLHRSSKPEFSPI 149
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 356 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 261
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 392 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 309
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 229 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 393
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 323 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 216
C E PF HE ALTL + PTA L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 142 NFKWVRTPAYSNDEAGDLMTVPSGPILVSRTGA 240
+F W P + N++AG + PS P+ S +G+
Sbjct: 282 SFAWAMIPLFENNQAGGAAS-PSSPLAPSMSGS 313
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 146 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGS 6
K E LRSF + LP K+ I A++ GN+ GRN GS
Sbjct: 93 KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGS 140
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 356 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 261
+ G +LP P C + P P +V RF LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,253,117
Number of Sequences: 37544
Number of extensions: 375627
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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