Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0469
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          23   7.5  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          23   7.5  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          23   7.5  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          23   7.5  
AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    23   7.5  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   10.0 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   10.0 

>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 301 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 390
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 301 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 390
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 301 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 390
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 301 GVGRS*QQDGGHGSRNPLRSVQRLTCRSNQ 390
           G G +    GG GS  P    + L C+ N+
Sbjct: 253 GTGGTGTSSGGGGSFQPPTLTEELLCKHNE 282


>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 445 VPVTVVYRQNASAPSIFRAGCFGR*VVAHS 356
           +P+ V+ ++N +AP+ + A C  R    H+
Sbjct: 36  IPLEVLEQENGTAPADWSASCTQRRTEDHA 65


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 306 WSLMTAGRWPWKSESAKE 359
           WS+  AG W W S SA E
Sbjct: 410 WSVC-AGNWMWVSSSAFE 426


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 22.6 bits (46), Expect = 10.0
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 294  HERRWSLMTAGRWPWKSESAKECATTHLPKQ 386
            H   W +     WP   ES   C T    KQ
Sbjct: 1189 HGPDWLVKDPKHWPKNIESGNTCETAKEEKQ 1219


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,326
Number of Sequences: 2352
Number of extensions: 12940
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)