Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0469
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 32 0.33
At1g74690.1 68414.m08650 calmodulin-binding family protein low s... 29 1.8
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 29 3.1
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat... 28 5.4
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 5.4
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 5.4
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P... 27 9.5
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P... 27 9.5
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 27 9.5
At2g38320.1 68415.m04708 expressed protein 27 9.5
At2g25100.1 68415.m03003 ribonuclease HII family protein contain... 27 9.5
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop... 27 9.5
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 435 VTGTCDAKFLIW-YH*AVTSRTCATESAXGSG 527
VTG+ D+ L+W H A TSRT +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715
>At1g74690.1 68414.m08650 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 587
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 212 PLGTVIRSPASSFE*AGVLTHLKFENRLRSFR 117
P +V + PAS+FE + V T +FE RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 275 LGALTLRLVHPTAPVLLTKIGPLGTVIRSPASSFE*AGVLTHLKFEN 135
LG+ T R V+ + +LL + GTVIRS S+ GV H N
Sbjct: 881 LGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANERN 927
>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 520
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 315 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 422
+T+ WP SESAK+ L + P ++ + C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 271 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 372
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 271 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 372
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
reductase homolog (PRH26) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738760; identical to cDNA PAPS reductase homolog
(PRH26) GI:1710113
Length = 458
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 282 LMGHHERRWSLMTAGRWPWKSESAKEC 362
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
reductase homolog (PRH19) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738756; identical to cDNA PAPS reductase homolog
(PRH19) GI:1710111
Length = 465
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 282 LMGHHERRWSLMTAGRWPWKSESAKEC 362
L G HER GRW W+ AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Frame = +3
Query: 336 WKSESAKECATTHLPKQPALKMD-------GAEAFCLYTTVTGTCDAK 458
W+ E KE TH P L +D G +A+ T V CDA+
Sbjct: 250 WRRECIKEMNATHSPSCSLLFLDCGSLHDPGRQAWMRITRVLSNCDAR 297
>At2g38320.1 68415.m04708 expressed protein
Length = 410
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 106 RHWGRNDLNLFSNFKWVRTP 165
RHW +D+ +F+++ W R P
Sbjct: 215 RHWTNSDIIVFNSYLWWRMP 234
>At2g25100.1 68415.m03003 ribonuclease HII family protein contains
Pfam profile: PF01351 ribonuclease HII
Length = 296
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 267 LNTTFGSSHSASSAYQNWPTWHRHQISGF--IVRVS 166
+N FGS + + W H+H + GF +VR S
Sbjct: 188 INRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFS 223
>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
5'-adenylylsulfate (APS) sulfotransferase 2 /
3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
homolog 43 (PRH-43) identical to SP|P92981
5'-adenylylsulfate reductase 2, chloroplast precursor
(EC 1.8.4.9) (Adenosine 5'-phosphosulfate
5'-adenylylsulfate sulfotransferase 2) (APS
sulfotransferase 2) (Thioredoxin independent APS
reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
reductase homolog 43) (PAPS reductase homolog 43)
(Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
reductase homolog (PRH43) GI:1710115
Length = 454
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 282 LMGHHERRWSLMTAGRWPWKSESAKEC 362
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,177,834
Number of Sequences: 28952
Number of extensions: 276862
Number of successful extensions: 625
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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