Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0464
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 339 2e-94
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 196 3e-51
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 185 6e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 138 7e-34
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 103 2e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 102 6e-23
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 94 1e-20
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 52 8e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.005
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.089
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.16
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.27
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.36
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.9
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 2.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 3.3
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 4.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.4
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 5.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 7.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 339 bits (833), Expect = 2e-94
Identities = 154/166 (92%), Positives = 161/166 (96%)
Frame = +2
Query: 80 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 259
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 260 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 439
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 440 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 577
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYE
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYE 167
Score = 72.5 bits (170), Expect = 5e-14
Identities = 32/36 (88%), Positives = 35/36 (97%)
Frame = +1
Query: 577 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 684
GYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TT
Sbjct: 168 GYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTT 203
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 196 bits (477), Expect = 3e-51
Identities = 88/167 (52%), Positives = 121/167 (72%), Gaps = 1/167 (0%)
Frame = +2
Query: 98 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 277
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 278 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 454
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 455 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEDTHSPT 595
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+ P+
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPS 178
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 577 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 684
G+++P AI + ++ GRD+TDYL L + G+ ++
Sbjct: 173 GFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSS 208
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 185 bits (450), Expect = 6e-48
Identities = 85/166 (51%), Positives = 121/166 (72%), Gaps = 2/166 (1%)
Frame = +2
Query: 86 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 259
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 260 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 439
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 440 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 577
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYE 167
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 586 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 684
L H + RLD+AGRD T YL+ +L +GY+F T
Sbjct: 171 LNHLVGRLDVAGRDATRYLISLLLRKGYAFNRT 203
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 138 bits (334), Expect = 7e-34
Identities = 78/192 (40%), Positives = 108/192 (56%), Gaps = 32/192 (16%)
Frame = +2
Query: 98 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 226
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 227 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 385
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 386 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 541
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 542 GDGVSHTVPIYE 577
GDGV+H +P+ E
Sbjct: 187 GDGVTHIIPVAE 198
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 577 GYALPHAILRLDLAGRDLTDYLMKILTER 663
GY + +I + LAGRD+T ++ +L +R
Sbjct: 199 GYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 103 bits (247), Expect = 2e-23
Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 3/161 (1%)
Frame = +2
Query: 98 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 277
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 278 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 454
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 455 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPI 571
+N P++ I + S Y + + ++GIVL+ G+ SH +P+
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPV 182
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 102 bits (244), Expect = 6e-23
Identities = 58/165 (35%), Positives = 88/165 (53%)
Frame = +2
Query: 83 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 262
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 263 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 442
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 443 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 577
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYD 165
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 94.3 bits (224), Expect = 1e-20
Identities = 48/167 (28%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
Frame = +2
Query: 83 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 262
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 263 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 436
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 437 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 577
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVD 168
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 52.0 bits (119), Expect = 8e-08
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 284 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 451
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 452 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 577
P +A + ++ LYA G G+V+D G + PI +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILD 213
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.9 bits (79), Expect = 0.005
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Frame = +2
Query: 98 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 277
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 278 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 445
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 446 FETFNTPAMYVAIQAVLSLYASGRTT--------------GIVLDSGDGVSHTVPIYE 577
FE F A A L + G T +V+DSG +H +P+ +
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVID 175
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 595 AILRLDLAGRDLTDYLMKILTERGYS 672
A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.089
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 344 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 487
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 143 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 286
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 468 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRIRTPP 593
P T+P P T PV P S P+ P P PS+ I + P
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIP 1077
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 465 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRIRTPPRHPAS 608
PP +PS +P VPPV P+ P P PS + PP P S
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPS--VGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 240 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 79
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = +3
Query: 465 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRIRTPPRH 599
PP P + T PV PV+ A P P P+ H
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAEH 411
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -1
Query: 601 GWRGGVRILVDGHGVGDTVAGVQHDTGGTTGR 506
G RGG G G GDTV GG GR
Sbjct: 128 GGRGGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 489 PCSRCTRPVVPPVSCWTPATVSPTPCPST 575
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 243 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 127
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 251 VPHLLHKSPSVPYRPSRPDGGAFPRSRET 165
+ L+ K+PS PY SRP A S T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 431 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEDTHSPTP 598
+T +M P+M + ++ + G VL SGD V+ +P D H P
Sbjct: 1794 VTSLMLVNSKHPSMSALCRFIIYKSVTMLQNGEVLKSGDYVTEFIPALLDMHVHIP 1849
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 386 LLTEAPLNPKANREKMTQIMFETFN 460
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 480 PSKPCSRCTRPVVPPVSCWTPATV-SPTPCPSTR-IRTPPRHPASGLGRS*P 629
P P R P PP S P+T P P S+R + PP P + GRS P
Sbjct: 352 PLPPQGRSAPPPPPPRSA--PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 465 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRIRTPPRHPAS 608
PP PS P P +PP A ++P P P+ PP PA+
Sbjct: 432 PPSAPPSLPMGAPAAPPLPP-----SAPIAP-PLPAGMPAAPPLPPAA 473
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +3
Query: 510 PVVPPVSCWTPATVSPTPCPSTRIRTPPRHPASGLGR---S*PHR 635
P++PP+ C A + TP RTP S L S PH+
Sbjct: 452 PLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHK 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 280 FEGQDTSFALCLISYIRVLLSHTDHHA 200
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 464 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEDTHSP 592
P A+ AV+S+ + T IVL G + +ED HSP
Sbjct: 697 PGSVEAVNAVISIAKANPTFPIVLQWTGGRAGGHHSFEDFHSP 739
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 400 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 549
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,501
Number of Sequences: 5004
Number of extensions: 68255
Number of successful extensions: 252
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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