Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0463
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   1.2  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    27   3.6  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   4.8  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    25   8.4  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 237 YNWHDCFVCKYI*IHINLYVFYIKCTYLKKILIR---LSVCLETYTLYPLTHLMCTHE 73
           ++WHD F+  Y+  +   ++   KC+ +  +  R   +   L   T++PL +    H+
Sbjct: 127 HDWHDIFMIGYLISNAPWFILVSKCSPVNSMASRIRNIGSALFVLTIFPLIYWYIQHK 184


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 298 RSNATLRFTYKNLGSHVIC 242
           RSN  +RFT  N G+H IC
Sbjct: 86  RSNEAVRFTTTNEGTHRIC 104


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 435 SIHVLIKYCTKCFELNFVSGLRVI 364
           +IH+L+K+C    + N++S  R++
Sbjct: 515 TIHMLLKFCVVNIDQNYISSSRLV 538


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 648 RQRVFY-FITTTTTFDKHFHSCCLRSF 571
           R+R F  F   T T    FH+CCL +F
Sbjct: 245 RERDFETFAKLTMTDSNQFHACCLDTF 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,615
Number of Sequences: 5004
Number of extensions: 60807
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)