Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0463
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0035 - 9945522-9945557,9946413-9946598,9948217-9948313,994...    29   3.8  
01_07_0093 + 41045841-41045968,41046068-41046161,41046740-410469...    28   6.6  

>04_03_0035 -
           9945522-9945557,9946413-9946598,9948217-9948313,
           9948789-9949114
          Length = 214

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 LYKTHINLYVFIYIYTQNNRANYIVQ 245
           L+  H+  ++ IYIY  N R +YIV+
Sbjct: 102 LWSPHVRRFINIYIYVGNARKSYIVK 127


>01_07_0093 +
           41045841-41045968,41046068-41046161,41046740-41046925,
           41047035-41047082,41047158-41047343,41047430-41047516,
           41048059-41048145,41048231-41048317
          Length = 300

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 192 INLYVFYIKCTYLKKILIRLSVCLETYTLYPLTHLMCTHENALAH 58
           +N Y+ Y  C Y +  + +   C E Y  Y  TH  C     L H
Sbjct: 35  VNEYMNYYDCAY-RMAVQKDQYCQEMYNSYKATHESCVCAMVLPH 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,154
Number of Sequences: 37544
Number of extensions: 274867
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)