Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0463
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)                 28   9.0  
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 147 FFLNKYILYKTHINLYVFIYIYTQNNRANYIVQITWEPKFLY 272
           F++  YI    +I +Y++IY YT      Y    T+   + Y
Sbjct: 9   FYIYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTY 50


>SB_59689| Best HMM Match : Pkinase (HMM E-Value=0.007)
          Length = 881

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 304 LIRHK*KNKKIRCRCEIQISYNS*TAY 384
           ++ H+  NK+IRCR E+   Y+S  AY
Sbjct: 352 VVFHERINKEIRCRVEVPHEYHSVEAY 378


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 162 YILYKTHINLYVFIYIYTQNNRANYIVQITWEPKFLYV 275
           ++L+ TH    + +  YT N RA +++  T+  + L+V
Sbjct: 139 HVLHYTHTKPALHVLHYTHNTRALHVLHYTYTKRALHV 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,684,679
Number of Sequences: 59808
Number of extensions: 397545
Number of successful extensions: 795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)