Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0463
         (731 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    35   0.35 

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 34.7 bits (76), Expect = 0.35
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -3

Query: 276 SHIKI*VPTLFVQYNWHDCFVCKYI*IHINLYVFYIKCTYLKKILIRLSVCLETYTLYPL 97
           +HI + V T    Y +    +C +I +++++YV+   C  +   +  L VC  TYT Y  
Sbjct: 89  AHIHMCVYTYIYVYIYTHIHICVHINMYVSIYVYIYTCIQIYIYMYTLYVC--TYT-YMC 145

Query: 96  THL-MCTHENALAHYNYI 46
           T++ +C H + +    YI
Sbjct: 146 TYIHICIHTSIIYVCVYI 163


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,704,071
Number of Sequences: 237096
Number of extensions: 1729544
Number of successful extensions: 2716
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2693
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)