Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0463
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73020.1 68414.m08444 expressed protein contains Pfam profile...    31   1.0  
At3g18215.1 68416.m02317 expressed protein contains Pfam profile...    29   4.2  
At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger) fa...    28   7.3  
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    27   9.7  

>At1g73020.1 68414.m08444 expressed protein contains Pfam profile
           PF04547: Protein of unknown function, DUF590; expression
           supported by MPSS
          Length = 558

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 105 IMYKFLNKQTNESVFFLNKYILYKTHINLYVFIYIY 212
           +  K +N++ NESV +    ++YKT+I ++  + ++
Sbjct: 273 VSVKLINREINESVEYRANSLIYKTYIGIFYHVLLH 308


>At3g18215.1 68416.m02317 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 244

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 639 VFYFITTTTTFDKHFHSCCLR 577
           + YF+ TTT+F +H HS   R
Sbjct: 207 ILYFLDTTTSFTRHLHSQSFR 227


>At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 132

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 166 MYLFKKNTDSFVCLFRNLYIIPTYALNVYSREC 68
           M  FK+N  + V  F ++  I  Y +N Y R C
Sbjct: 1   MSYFKRNEGTIVFAFASIGFIAFYIINYYIRRC 33


>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
            PF00010 helix-loop-helix DNA-binding domain; PMID:
            12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -2

Query: 628  YHNYDYI*QTFSFMLSTFIFVQSY*KAPMNPIIY*NTCYIKIVLHNVMYIIYMKSRRTLP 449
            Y+ YDY+   F F+   +I++ +    P N ++  + C   ++LH+V    Y  S     
Sbjct: 1223 YYYYDYL--LFVFI---YIYIHNKFNIPSNVLLSPSLCVTMVLLHHVSLSHYQNSSSLFS 1277

Query: 448  TRCLIDTCLNKIL 410
            +      CL  +L
Sbjct: 1278 SSSESILCLFLVL 1290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,323
Number of Sequences: 28952
Number of extensions: 266886
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)