Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0462
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 394 e-110
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 394 e-110
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 392 e-110
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 392 e-110
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 391 e-109
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 389 e-108
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 388 e-108
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 388 e-108
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 386 e-108
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 200 7e-52
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 198 4e-51
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 198 4e-51
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 193 8e-50
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 193 8e-50
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 193 8e-50
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 193 8e-50
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 136 1e-32
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 135 2e-32
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 36 0.025
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 36 0.025
At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ b... 33 0.18
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 32 0.31
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051... 31 0.55
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 31 0.73
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 31 0.96
At5g55570.1 68418.m06927 expressed protein 29 3.9
At4g24240.1 68417.m03479 WRKY family transcription factor contai... 28 5.1
At1g26890.1 68414.m03279 hypothetical protein 28 6.8
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 27 8.9
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 27 8.9
At2g47830.2 68415.m05970 cation efflux family protein / metal to... 27 8.9
At2g47830.1 68415.m05969 cation efflux family protein / metal to... 27 8.9
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 27 8.9
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 394 bits (970), Expect = e-110
Identities = 180/212 (84%), Positives = 197/212 (92%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 212 FRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 271
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+
Sbjct: 272 PLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMI 331
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKM 363
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 394 bits (970), Expect = e-110
Identities = 181/212 (85%), Positives = 196/212 (92%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKLSTP++GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 212 FRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 271
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQYR LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQML
Sbjct: 272 PLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQML 331
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKM 363
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 392 bits (966), Expect = e-110
Identities = 179/212 (84%), Positives = 197/212 (92%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 212 FRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 271
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQYR+LTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQML
Sbjct: 272 PLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQML 331
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKM 363
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 392 bits (966), Expect = e-110
Identities = 179/212 (84%), Positives = 197/212 (92%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 212 FRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 271
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQYR+LTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQML
Sbjct: 272 PLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQML 331
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKM
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKM 363
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 391 bits (962), Expect = e-109
Identities = 178/212 (83%), Positives = 196/212 (92%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 212 FRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 271
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+
Sbjct: 272 PLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMI 331
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
N+QNKNSSYFVEWIPNNVK+ VCDI PRGL M
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSM 363
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 389 bits (957), Expect = e-108
Identities = 177/212 (83%), Positives = 195/212 (91%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKL+ PT+GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 212 FRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 271
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQY AL+VPELTQQM+DAKNMM A DPRHGRYLT +A+FRG++S KEVDEQM+
Sbjct: 272 PLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMM 331
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
NIQNKNSSYFVEWIPNNVK+ VCDI P+GLKM
Sbjct: 332 NIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKM 363
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 388 bits (956), Expect = e-108
Identities = 177/212 (83%), Positives = 194/212 (91%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKL+ PT+GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 212 FRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 271
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQY AL+VPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+
Sbjct: 272 PLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMM 331
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
N+QNKNSSYFVEWIPNNVK+ VCDI P GLKM
Sbjct: 332 NVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKM 363
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 388 bits (955), Expect = e-108
Identities = 179/212 (84%), Positives = 196/212 (92%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 212
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKLSTP++GDLNHL+S TMSGVT LRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 213 FRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 272
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQY +LTVPELTQQM+D+KNMM A DPRHGRYLT +AIFRG+MS KEVDEQ+L
Sbjct: 273 PLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQIL 332
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
NIQNKNSSYFVEWIPNNVK+ VCDIPP+GLKM
Sbjct: 333 NIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKM 364
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 386 bits (950), Expect = e-108
Identities = 177/212 (83%), Positives = 195/212 (91%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEALYDIC
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 212
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
FRTLKLSTP++GDLNHL+S TMSGVT LRFPGQLN+DLRKLAVN++PFPRLHFFM GFA
Sbjct: 213 FRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA 272
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
PLTSRGSQQY +LTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQ+L
Sbjct: 273 PLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIL 332
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPPRGLKM 691
N+QNKNSSYFVEWIPNNVK+ VCDIPP G+KM
Sbjct: 333 NVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKM 364
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 200 bits (488), Expect = 7e-52
Identities = 85/192 (44%), Positives = 126/192 (65%)
Frame = +2
Query: 101 YSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 280
+++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLN 228
Query: 281 HLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 460
L+S T+S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S + +V
Sbjct: 229 RLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSV 288
Query: 461 PELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIP 640
PE+T +F+ NMMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P
Sbjct: 289 PEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCP 348
Query: 641 NNVKTGVCDIPP 676
K G+ PP
Sbjct: 349 TGFKCGINYQPP 360
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 198 bits (482), Expect = 4e-51
Identities = 85/207 (41%), Positives = 132/207 (63%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
R+L + PTY +LN L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +A
Sbjct: 214 RRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYA 273
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
P+ S + L+VPE+T +F+ +MMA CDPRHG+Y+ ++RG + K+V+ +
Sbjct: 274 PVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPP 676
I+ K + FV+W P K G+ PP
Sbjct: 334 TIKTKRTVQFVDWCPTGFKCGINYQPP 360
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 198 bits (482), Expect = 4e-51
Identities = 85/207 (41%), Positives = 132/207 (63%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+YDIC
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
R+L + PTY +LN L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +A
Sbjct: 214 RRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYA 273
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
P+ S + L+VPE+T +F+ +MMA CDPRHG+Y+ ++RG + K+V+ +
Sbjct: 274 PVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPP 676
I+ K + FV+W P K G+ PP
Sbjct: 334 TIKTKRTVQFVDWCPTGFKCGINYQPP 360
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 193 bits (471), Expect = 8e-50
Identities = 86/207 (41%), Positives = 131/207 (63%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +A
Sbjct: 214 RRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA 273
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
P+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ +
Sbjct: 274 PVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPP 676
I+ K + FV+W P K G+ PP
Sbjct: 334 TIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 193 bits (471), Expect = 8e-50
Identities = 86/207 (41%), Positives = 131/207 (63%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +A
Sbjct: 214 RRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA 273
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
P+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ +
Sbjct: 274 PVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPP 676
I+ K + FV+W P K G+ PP
Sbjct: 334 TIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 193 bits (471), Expect = 8e-50
Identities = 86/207 (41%), Positives = 131/207 (63%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +A
Sbjct: 214 RRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA 273
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
P+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ +
Sbjct: 274 PVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPP 676
I+ K + FV+W P K G+ PP
Sbjct: 334 TIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 193 bits (471), Expect = 8e-50
Identities = 86/207 (41%), Positives = 131/207 (63%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 235
+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+YDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 236 FRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFA 415
R+L + PTY +LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +A
Sbjct: 214 RRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA 273
Query: 416 PLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQML 595
P+ S + L+V E+T F+ +MMA CDPRHG+Y+ ++RG + K+V+ +
Sbjct: 274 PVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVG 333
Query: 596 NIQNKNSSYFVEWIPNNVKTGVCDIPP 676
I+ K + FV+W P K G+ PP
Sbjct: 334 TIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 136 bits (329), Expect = 1e-32
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 7/214 (3%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 232
+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRI 213
Query: 233 CFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 412
L L+ PT+ N LVS MS TT LR+PG +N DL L +++P PR HF M G+
Sbjct: 214 AVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGY 273
Query: 413 APLT-SRGSQQYRALTVPELTQQMFDAKNMMAACDPRH-----GRYLTVAAIFRGRMSMK 574
PLT R + R TV ++ +++ KN+M + R+ +Y+++ I +G +
Sbjct: 274 TPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPT 333
Query: 575 EVDEQMLNIQNKNSSYFVEWIPNNVKTGVCDIPP 676
+V E + I+ + F+EW P +++ + P
Sbjct: 334 QVHESLQRIRERKLVNFIEWGPASIQVALSKKSP 367
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 135 bits (327), Expect = 2e-32
Identities = 70/214 (32%), Positives = 117/214 (54%), Gaps = 7/214 (3%)
Frame = +2
Query: 56 ISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 232
+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRI 213
Query: 233 CFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 412
L L+ PT+ N LVS MS TT LR+PG +N DL L +++P PR HF M G+
Sbjct: 214 AVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGY 273
Query: 413 APLT-SRGSQQYRALTVPELTQQMFDAKNMMAACDPRH-----GRYLTVAAIFRGRMSMK 574
PLT R + R TV ++ +++ KN+M + R+ +Y+++ I +G +
Sbjct: 274 TPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPT 333
Query: 575 EVDEQMLNIQNKNSSYFVEWIPNNVKTGVCDIPP 676
+V E + I+ + F++W P +++ + P
Sbjct: 334 QVHESLQRIRERKLVNFIDWGPASIQVALSKKSP 367
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 35.9 bits (79), Expect = 0.025
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +2
Query: 164 SVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPG-QL 340
++ LVE + ++N DIC+ S PT +L LVSL + G + RFP
Sbjct: 819 NIPNLVELSSSFQNLNNLERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDIST 878
Query: 341 N---ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 460
N DL + + VP+ +FF LT +G ++ + +++
Sbjct: 879 NIKYLDLDQTGIEEVPWQIENFF--NLTKLTMKGCRELKCVSL 919
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 35.9 bits (79), Expect = 0.025
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +2
Query: 164 SVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPG-QL 340
++ LVE + ++N DIC+ S PT +L LVSL + G + RFP
Sbjct: 780 NIPNLVELSSSFQNLNNLERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDIST 839
Query: 341 N---ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 460
N DL + + VP+ +FF LT +G ++ + +++
Sbjct: 840 NIKYLDLDQTGIEEVPWQIENFF--NLTKLTMKGCRELKCVSL 880
>At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ
boundaries domain protein 30 (LBD30) identical to LOB
DOMAIN 30 [Arabidopsis thaliana] GI:16660632; supported
by full-length cDNA gi:16660631
Length = 228
Score = 33.1 bits (72), Expect = 0.18
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Frame = +2
Query: 215 EALYDICFRT-LKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 391
+A+ ICF +L P YG ++H+VSL V+ +L+ LA +P P+
Sbjct: 73 DAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVS----LQTELSYLQAHLATLELPQPQ- 127
Query: 392 HFFMPGFAPLTSRGSQQYRALT-VPELTQQMFDAKNM 499
P P++S GS Q ++T +P ++ ++D ++
Sbjct: 128 ----PPQVPVSSSGSLQALSITDLPTISPSVYDLSSI 160
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 128 SDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLST 259
S+ ++ P ++++ +LV D TY + + ++ D C R +K+ST
Sbjct: 77 SNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMST 120
>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
[Synechococcus sp. PCC 7002]
Length = 366
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 438 WLPRDVSGAKPGMKKCRRGKGTMLTASLRRSAFSCPG-NRRHVVTPDMVSDTRW 280
W+ R SGAK MK +G+ + S R F+C G R + V +M+ W
Sbjct: 40 WIVRTQSGAKTCMKSKAKGRCVICHGSGRVDCFNCCGKGRTNCVDVEMLPRGEW 93
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 31.1 bits (67), Expect = 0.73
Identities = 22/81 (27%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Frame = +1
Query: 238 PHAKTIHTHIRRPEPPGVADHVRRDDVPAVPRTAERR---PAQAGGQHGXXXXXXXXXXX 408
P T H RR PP H R PA+ RR PA G H
Sbjct: 13 PPLATTAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPVTT 72
Query: 409 XXXXDVTRQPAVPRAHRAGAH 471
R P+ P +G H
Sbjct: 73 NTGHRHCRPPSNPATTNSGHH 93
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 30.7 bits (66), Expect = 0.96
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Frame = +2
Query: 272 DLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 451
+L++L+ L MSG T FP +N K +N+ RL F ++ Q
Sbjct: 813 NLHNLIELDMSGCTNLETFPTGINLQSLK-RINLARCSRLKIFPDISTNISELDLSQTAI 871
Query: 452 LTVPELTQQMFDAKNM-MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFV 628
VP + K + M C+ +L ++ + +K VD I +K Y +
Sbjct: 872 EEVPLWIENFSKLKYLIMGKCNMLEYVFLNISKL----KHLKSVDFSDCGILSKADMYML 927
Query: 629 EWIPNNVKTGV 661
+ +PN + +
Sbjct: 928 Q-VPNEASSSL 937
>At5g55570.1 68418.m06927 expressed protein
Length = 143
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 489 ASNICCVSS-GTVSARYCWLPRDVSGAKPGMKKCRRGKGTMLTASLRR 349
AS++C V S TV +R + PG ++ R G G M+T S RR
Sbjct: 6 ASSLCRVPSLWTVRSRPRQIKSTAGFVSPGRRRSRGGGGGMMTMSNRR 53
>At4g24240.1 68417.m03479 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 353
Score = 28.3 bits (60), Expect = 5.1
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = -3
Query: 585 SSTSFMDMRPRKMAATVR*RPWRGSQAAIMFLASNICCVSSGTVSARYCWL-PRDVSGAK 409
SS+S M +T+ P A F++S+ C S +S+ + + P +SG+
Sbjct: 172 SSSSSPPMLANGAPSTINFAPSPPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGS- 230
Query: 408 PGMKKCRRGKGTMLTASLRRSAFSCPGNRRH 316
RGK + +ASL+R S P +R H
Sbjct: 231 -------RGKPPLSSASLKRRCNSSPSSRCH 254
>At1g26890.1 68414.m03279 hypothetical protein
Length = 280
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 242 TLKLSTPTYGDLNHLVSLTMSG-VTTCLRFPGQLNADLRKLAVNMVPFPRLHF 397
TL L Y D LVSL S V CL+ + +L K V + +LH+
Sbjct: 110 TLSLRFVVYKDEESLVSLLSSSPVLNCLKVDRHKDDNLTKFTVKVSTLKQLHY 162
>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1705
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 470 TQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 622
T +D+K + C+ R L V A RG + DE+++N+ NKNS +
Sbjct: 910 TNPYYDSKVVGKYCEKRDPT-LAVVAYRRG-----QCDEELINVTNKNSLF 954
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 470 TQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 622
T +D+K + C+ R L V A RG + DE+++N+ NKNS +
Sbjct: 910 TNPYYDSKVVGKYCEKRDPT-LAVVAYRRG-----QCDEELINVTNKNSLF 954
>At2g47830.2 68415.m05970 cation efflux family protein / metal
tolerance protein, putative (MTPc1) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 468
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 31 RFRYGHPPHLQNQRRVP*QNNEHIFSCTIT*SVGHS 138
R+ +GHP H Q Q + P + E IF +T +G S
Sbjct: 54 RWHFGHPDHHQ-QYQKPGEEGEKIFRLGLTADIGLS 88
>At2g47830.1 68415.m05969 cation efflux family protein / metal
tolerance protein, putative (MTPc1) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 471
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 31 RFRYGHPPHLQNQRRVP*QNNEHIFSCTIT*SVGHS 138
R+ +GHP H Q Q + P + E IF +T +G S
Sbjct: 54 RWHFGHPDHHQ-QYQKPGEEGEKIFRLGLTADIGLS 88
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 351 RSAFSCPGNRRHVVTPDMVSDTRWFRSPYVGVDSFSVRKQIS 226
++ F C +TP+ +TR+ RSPY F K +S
Sbjct: 232 KATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKALS 273
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,397
Number of Sequences: 28952
Number of extensions: 242930
Number of successful extensions: 782
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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