Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0461
         (670 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3AHG3 Cluster: Putative uncharacterized protein; n=1; ...    37   0.38 
UniRef50_Q13541 Cluster: Eukaryotic translation initiation facto...    37   0.51 
UniRef50_Q22D21 Cluster: Cation channel family protein; n=1; Tet...    33   8.2  

>UniRef50_Q3AHG3 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. CC9605|Rep: Putative uncharacterized
           protein - Synechococcus sp. (strain CC9605)
          Length = 242

 Score = 37.1 bits (82), Expect = 0.38
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 656 SKAVSEGGSLESGAGRCGRTRPHLGGCIV-ICARKQIKNVRRALINSRLRREAELTRPNE 480
           SK V + GS     G  G+    + GC++ +C RK++  +R  +     RR++E   P E
Sbjct: 21  SKVVWKQGSYAVAMGLKGKKETLIPGCVIQLCTRKELVGIRNRIKVEEARRDSEFFTPEE 80

Query: 479 KK 474
           ++
Sbjct: 81  EQ 82


>UniRef50_Q13541 Cluster: Eukaryotic translation initiation factor
           4E-binding protein 1; n=17; Deuterostomia|Rep:
           Eukaryotic translation initiation factor 4E-binding
           protein 1 - Homo sapiens (Human)
          Length = 118

 Score = 36.7 bits (81), Expect = 0.51
 Identities = 25/88 (28%), Positives = 37/88 (42%)
 Frame = +1

Query: 376 GGRVCAPTERKAISFGRRAAAGVEVSREYNFVHFFSFGRVNSASRRSRLLIKARLTFLIC 555
           GG  C+ T  +AI   RR   G  V            G + S +     +I  R   + C
Sbjct: 3   GGSSCSQTPSRAIPATRRVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRKFLMEC 62

Query: 556 LRAQMTMHPPR*GLVLPHLPAPDSNEPP 639
             + +T  PPR    +P + +P S+EPP
Sbjct: 63  RNSPVTKTPPRDLPTIPGVTSPSSDEPP 90


>UniRef50_Q22D21 Cluster: Cation channel family protein; n=1;
            Tetrahymena thermophila SB210|Rep: Cation channel family
            protein - Tetrahymena thermophila SB210
          Length = 1627

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 545  NVRRALINSRLRREAELTRPNEKK*TKLYSRETSTP 438
            NV +   NSR++R  +  R ++KK TK Y + TSTP
Sbjct: 1572 NVIKNFNNSRVKRYLDFQRKSKKKVTKEYKKITSTP 1607


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,842,150
Number of Sequences: 1657284
Number of extensions: 9968572
Number of successful extensions: 22885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22882
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)