Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0461
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.1  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   2.4  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    25   7.5  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   9.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 206 ISFEPTPFLLQYLLTFFHLKAHIHLLCF 123
           +SFE   F L++LL  F L  H + +CF
Sbjct: 389 LSFEDISFKLKFLLFSFRLSIHDNSICF 416


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 352 VTLSRSRRGGRVCAPTERKAISFGRRAAAG--VEVSREYNFVHFFSFGRV 495
           V +  SRR   + AP    A S+G R   G  V +SR  NF+  F  G +
Sbjct: 407 VRIGVSRREAPLDAPVGYDAYSYGLRDLGGQKVHMSRPRNFMDSFGTGDI 456


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 343 VSVVTLSRSRRGGRVCAPTERKAISFGRRAAAGV-EVSREYNFVHFFSFG 489
           VS +    + R GR+ APT ++  S     +  + E +  YN + F ++G
Sbjct: 69  VSTICERIAERSGRLAAPTRKREFSLSNGVSVVLREPTMTYNTLGFKTWG 118


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 461 YSRETSTPAAARRPKEIAFLSVGAH 387
           Y+ ET   A ARR K +  L  G H
Sbjct: 315 YTNETEAEAKARRDKRLGELLTGKH 339


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 354 YNRHTQYYNLRFLVYRGVSRYFTWAFGACSAL 259
           YN    YY+ R L+YR +  Y      A  AL
Sbjct: 488 YNLQLVYYSFRMLIYRPLLHYLEADSPAMQAL 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,937
Number of Sequences: 5004
Number of extensions: 41107
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)