Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0461
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-21|CAB60306.2|  318|Caenorhabditis elegans Hypothetical...    29   3.0  
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    27   9.1  
U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical pr...    27   9.1  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        27   9.1  

>AL117193-21|CAB60306.2|  318|Caenorhabditis elegans Hypothetical
           protein Y105C5A.14 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 577 HPPR*GLVLPHLPAPDSNEPPSL 645
           H    GLVLPHLPA +  EP S+
Sbjct: 144 HEDHYGLVLPHLPAIEYYEPTSM 166


>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 367 SRRGGRVCAPTERKAISFGRRAAAGVEVSREYNFVHFF--SFGRVNSASRRS 516
           +RR   VC PTER   SFG        +      VHF   +FG  N+  R++
Sbjct: 747 ARRIMAVCYPTERDEASFGVMVDENGAIVDYLRMVHFTKRTFGGGNNGLRKA 798


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 367 SRRGGRVCAPTERKAISFGRRAAAGVEVSREYNFVHFF--SFGRVNSASRRS 516
           +RR   VC PTER   SFG        +      VHF   +FG  N+  R++
Sbjct: 747 ARRIMAVCYPTERDEASFGVMVDENGAIVDYLRMVHFTKRTFGGGNNGLRKA 798


>U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical
           protein T24C12.3 protein.
          Length = 651

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 294 TYLHLDIRGNVNYNIVCVGCNPL 362
           TYL ++++GNV Y IV   C PL
Sbjct: 423 TYLAVNVKGNVKYGIVT--CEPL 443


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 367 SRRGGRVCAPTERKAISFGRRAAAGVEVSREYNFVHFF--SFGRVNSASRRS 516
           +RR   VC PTER   SFG        +      VHF   +FG  N+  R++
Sbjct: 747 ARRIMAVCYPTERDEASFGVMVDENGAIVDYLRMVHFTKRTFGGGNNGLRKA 798


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,348
Number of Sequences: 27780
Number of extensions: 238189
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)