Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0461
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 599 TRPHLGGCIVICARKQIKNVRRAL 528
           T+P   GCI+  + +++  V RA+
Sbjct: 338 TKPRARGCIIFGSDQEVAGVMRAV 361


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 188 ELARN*YRSRRVK*TYKAQI*REPRAEQAPNAQVKYLLTPRY 313
           ELA+   R +  K  Y+  +  +P A  A   +V+ +  PRY
Sbjct: 358 ELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRY 399


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 188 ELARN*YRSRRVK*TYKAQI*REPRAEQAPNAQVKYLLTPRY 313
           ELA+   R +  K  Y+  +  +P A  A   +V+ +  PRY
Sbjct: 273 ELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRY 314


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 188 ELARN*YRSRRVK*TYKAQI*REPRAEQAPNAQVKYLLTPRY 313
           ELA+   R +  K  Y+  +  +P A  A   +V+ +  PRY
Sbjct: 592 ELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRY 633


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 95  YCRAHS*YSSPVQI*EHRNKLY 30
           YC AH+  S  V+I    N+LY
Sbjct: 423 YCAAHTDSSGAVKIVNMLNQLY 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,957
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)