Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0460
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3J943 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q2B8Q7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.0  
UniRef50_Q07783 Cluster: Transcriptional regulatory protein chvI...    33   4.0  
UniRef50_A4SC91 Cluster: DEAD/DEAH box helicase domain protein; ...    32   9.2  
UniRef50_A0YUY9 Cluster: DNA helicase II; n=2; Lyngbya sp. PCC 8...    32   9.2  
UniRef50_Q0U5F7 Cluster: Predicted protein; n=1; Phaeosphaeria n...    32   9.2  

>UniRef50_Q3J943 Cluster: Putative uncharacterized protein; n=1;
           Nitrosococcus oceani ATCC 19707|Rep: Putative
           uncharacterized protein - Nitrosococcus oceani (strain
           ATCC 19707 / NCIMB 11848)
          Length = 803

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 187 KHYELENTKGVKFLMEFWVVQPLQGRLMVSSLKKIL--RLYPQTTRSIRGCFGISL 348
           K  +L  TKG+K     W++QPL+GR       +IL  +L P   R+++   GI L
Sbjct: 457 KRPDLRETKGLKAT---WILQPLRGRKFYKKYSRILNAKLSPPKLRAVKTYGGIPL 509


>UniRef50_Q2B8Q7 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
           protein - Bacillus sp. NRRL B-14911
          Length = 278

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 418 THTSIDT*ERPVGAAPHADP*LGPGIFRNSREWTWSSVGRDV 293
           TH   D    P+G   +  P L   IF+N+ +WT + +GR +
Sbjct: 81  THLPADVWTSPLGIVRNEIPLLFDSIFKNNNDWTQTEIGRTI 122


>UniRef50_Q07783 Cluster: Transcriptional regulatory protein chvI;
           n=92; Bacteria|Rep: Transcriptional regulatory protein
           chvI - Agrobacterium tumefaciens
          Length = 241

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 172 IFLFGKHYELENTKGVKFLMEFWVVQPLQGRLMVSSLKKILRLYPQTTRSIRGCFGISLD 351
           IFL  K  E++   G+K   + ++ +P   RL+V  +K ILR    ++R      G +L 
Sbjct: 76  IFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR--RASSREASAATGGTLK 133

Query: 352 LTTDRHA 372
            T D+ A
Sbjct: 134 PTADQQA 140


>UniRef50_A4SC91 Cluster: DEAD/DEAH box helicase domain protein;
           n=1; Prosthecochloris vibrioformis DSM 265|Rep:
           DEAD/DEAH box helicase domain protein - Prosthecochloris
           vibrioformis DSM 265
          Length = 1887

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 267 DGFVVEKDSTSLPTDDQVHSRLFRNIPGPNY 359
           DGF +E+D+TS+ TDD+  + +FR++    Y
Sbjct: 837 DGFPLEEDTTSIATDDEELAYMFRDMHSSYY 867


>UniRef50_A0YUY9 Cluster: DNA helicase II; n=2; Lyngbya sp. PCC
           8106|Rep: DNA helicase II - Lyngbya sp. PCC 8106
          Length = 614

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 246 AATSRTPDGFVVEKDSTSLPTDDQVHSRLFRNIPGPNYGSACGAAPTGRSYV 401
           A     P GF+++ D+T + T D    +L R++ G  +   CG A +G++ +
Sbjct: 213 ATVKSVPSGFILKPDATVIKTLDVKQEQLARSL-GSGHRLFCGVAGSGKTLI 263


>UniRef50_Q0U5F7 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 325

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 241 VVQPLQGRLMVSSLKKILRLYPQTTRSIRGCFGISLDLTTDRHA-VRRPL 387
           V++PL GRLM      +LR++P       G     L++  D+   +RRPL
Sbjct: 50  VIEPLPGRLMNCPYPHVLRIHPLICEEYHGVCAKKLEVVFDQSLHMRRPL 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,309,950
Number of Sequences: 1657284
Number of extensions: 11795538
Number of successful extensions: 24016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24010
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)