Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0460
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   2.1  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          26   3.7  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   6.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.6  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 465 SQYYA*IF*IMYGLL*PIPVLIHKSDQW 382
           S Y A ++ I+YGLL   PV+  +S +W
Sbjct: 312 STYTAFVYGILYGLLEAYPVIFGESRKW 339


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 229 MEFWVVQPLQGRLMVSSLKKILRLYPQTTR-SIRGCFGISLDLTTDRHAVRRPLVALMYQ 405
           +E  ++     + ++  LKK++ LYPQT    IRG   I    T ++   +      +++
Sbjct: 125 LEVPIIHNGDSKTILDELKKVIELYPQTCAVLIRGHGVIGWGATWEKSKTQMECYEYLFE 184

Query: 406 YWYGLE 423
             Y L+
Sbjct: 185 LDYKLK 190


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 540 LEAIFLFQVHIVRGISIICYAL 605
           L A+F  ++ +VRG  I+CY L
Sbjct: 43  LIALFFIRILLVRGWYIVCYTL 64


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 83   KKCHSENRIKCI*GFNIFNKTLTISALL 166
            KKCH+      I G     KT TIS+L+
Sbjct: 942  KKCHAAEHYSLILGMPGTGKTTTISSLI 969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,868
Number of Sequences: 5004
Number of extensions: 52168
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)