Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0460
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1244 + 25139159-25139252,25139839-25139924,25140103-251401...    29   2.2  
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401...    29   2.2  
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    29   2.9  
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38...    29   3.8  
04_03_0232 - 13049649-13052807                                         28   6.6  
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    27   8.7  
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674...    27   8.7  

>07_03_1244 +
           25139159-25139252,25139839-25139924,25140103-25140156,
           25140633-25140728,25140923-25140974,25141092-25141111
          Length = 133

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 190 HYELENTKGVKFLMEFWVVQPLQGRLMVSSLKKIL--RLYPQTTRSIRGCFGI 342
           H E +  K   FL+ F+ V     R+M+  LK IL   +  + ++++R C GI
Sbjct: 23  HLEEDVPKKKLFLISFFCVLISHQRMMIKRLKGILIGNVLSEDSQAVRSCVGI 75


>01_04_0038 -
           15339047-15339230,15339683-15339741,15340031-15340160,
           15340248-15340498,15340632-15341225,15342050-15342511
          Length = 559

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 172 IFLFGKHYELENTKGVKFLMEFWVVQP 252
           ++ FG  +  EN+   + L EFW+V+P
Sbjct: 318 VYTFGPTFRAENSHTSRHLAEFWMVEP 344


>08_02_1186 + 25027498-25029854,25029953-25030564,25031742-25031847,
            25032669-25033199
          Length = 1201

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 473  LKLHSIMHEYFRSCTGYSNPYQY*YIRATSGRRTACRSVVRSRDIPKQPRMDLVVCG*RR 294
            LK H I     +S  GY    Q+ ++R+    R A    + S   P    + ++ CG  R
Sbjct: 819  LKAHCIWSRGIKSSDGYLQSLQHLHLRSCPSLRFALPMALPS--FPSLETLHIIHCGDLR 876

Query: 293  RIFFND 276
             IF  D
Sbjct: 877  HIFVPD 882


>06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-388276,
            388355-388482,388914-389048,389122-389250,389620-389787,
            389897-390019,390099-390227,390543-390866,390946-392901
          Length = 1448

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 216  SKIFNGVLGGAATSRTPDGFVVEKDSTSLPTDDQVHSRLFRN 341
            S  ++  L G A SR+PDG      S  +P   Q HSR   N
Sbjct: 1389 SGAYSEQLSGNAVSRSPDGQRTMMQSPLIPGQKQSHSRSSSN 1430


>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 313  TRSIRGCFGISLDLTTDRHAVRRPLVALMYQYWYGLE 423
            T  IRGC+ +    +  RH    P+V    ++W GLE
Sbjct: 984  TVKIRGCWSLKRLPSVGRHDSTPPIVDCEKEWWDGLE 1020


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 398 IRATSGRRTACRSVVRSRDIPKQPRMDLVVCG*RRRIFFNDETIRRP*SG--CT 243
           +R    + T C  ++   ++ + P +D+++CG  R +      +  P SG  CT
Sbjct: 484 VRPKPFKCTICTEMLNVPEVHRHPVLDVIICGSCRFLVIEKNRLEDPVSGGYCT 537


>04_04_0867 +
           28865857-28866657,28866778-28867113,28867248-28867451,
           28867567-28867746
          Length = 506

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 274 SSLKKILRLYPQTTRSIRGCFGISLDLTTDRHAVRR 381
           ++L + LRLYP     ++ CF  S D   D HAV++
Sbjct: 365 AALTETLRLYPGVPLDVKYCF--SDDTLPDGHAVKK 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,194,693
Number of Sequences: 37544
Number of extensions: 303765
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)