Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0460
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5) 31 0.55
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83) 30 1.3
SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2) 30 1.7
SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024) 29 2.9
SB_12454| Best HMM Match : efhand (HMM E-Value=0.016) 29 3.9
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 28 6.7
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
Length = 331
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 45 LSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIKH*RYQLYCTHI 176
L CAL+D + G + + + TG + V+IF + + + + C H+
Sbjct: 230 LLCALRDAFNGVLSTICI-TGCIQWRVIIFFVHYGMHSMACYHL 272
>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
Length = 533
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 45 LSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIKH*RYQLYCTHI 176
L CAL+D ++ + + TG N + V+I+ + + + + C H+
Sbjct: 341 LLCALRDAFKCVSLSTMCITGCNQWRVIIYYVHYGTHSMACHHL 384
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 45 LSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIKH*RYQLYCTH 173
L CAL+D + G + + TG + V+I+ + + + + C H
Sbjct: 187 LLCALRDAFNGVSSSTMCITGCIQWRVIIYYVHYGMHSMACHH 229
>SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)
Length = 544
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 45 LSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIKH*RYQLYCTHI 176
L CAL+D + G + + TG + V+I+ + + + + C H+
Sbjct: 52 LLCALRDAFNGVSSSTMCITGCIQWRVIIYYVHYGMHSMACHHL 95
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 45 LSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIKH*RYQLYCTHI 176
L CAL+D + G + + TG + V+I+ + + + + C H+
Sbjct: 266 LLCALRDAFNGVSSSTMCITGCIQWRVIIYYVHYGMHSMACHHL 309
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 45 LSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIKH*RYQLYCTHI 176
L CAL+D + G + + TG + V+I+ + + + + C H+
Sbjct: 409 LLCALRDAFNGVSSSTMCITGCIQWRVIIYYLHYGMHSMGCHHL 452
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 45 LSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIKH*RYQLYCTHI 176
L CAL+D + G + + TG + +I+ + + + + C H+
Sbjct: 223 LLCALRDAFNGVSSSTMCITGCIQWRAIIYYVHYGMHSMACHHL 266
>SB_31704| Best HMM Match : MFS_1 (HMM E-Value=0.024)
Length = 625
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = +3
Query: 105 GLNVFEVLIFLIKH*RYQLYCTHIFIW*TL*IRKYKGSKIFNG-VLGGAATSRTPDGFVV 281
G F + + I+H R + T + ++KY S + + V+ G + S D +VV
Sbjct: 187 GFMSFVLTAYFIRHWRPMVLLTSLPALSLFLLKKYSPSLLADKHVVAGYSRSLLDDDYVV 246
Query: 282 EKDSTSLPTDDQVHSRLFRNIPGPNYGSA-CGAAPTGRSYV 401
E+ L DD V R R + +Y A +P YV
Sbjct: 247 ERYFRCLLADDYVVERYSRCLLADDYVVAGYSRSPLADDYV 287
>SB_12454| Best HMM Match : efhand (HMM E-Value=0.016)
Length = 273
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 187 KHYELENTKGVKFLMEFWVVQPLQGRLMVSSLKKILRLYPQTT 315
K Y E+TK + ME +++ GRL S KK+L++ QTT
Sbjct: 205 KCYASEDTKTMS--MEVLILELTTGRLGKSEKKKVLKILGQTT 245
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 172 IFLFGKHYELENTKGVKFLMEFWVVQPLQGRLMVSSLKKILRLYPQT-TRSIRGCFGISL 348
IFL G+ L FL++ V P + S LK +L Y + + GC + +
Sbjct: 1258 IFLMGEEDSLTYPSLKNFLLKIVVGDPALRETLASDLKNLLEHYYELFPEIVEGCSSVRM 1317
Query: 349 D 351
D
Sbjct: 1318 D 1318
>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1902
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 243 GAATSRTPDGFVVEKDSTSLPTDDQVHSRLFRNIPGPN-YGSA 368
G+ + + DG EKD P + Q+ +R+ PGP+ +G A
Sbjct: 1399 GSDSEQEEDGQETEKDPGENPEEPQLGARVDEGAPGPSAFGKA 1441
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -1
Query: 368 CRSVVRSRDIPKQPRMDLVVC-G*RRRIFFNDETIRRP*SGCTTQNSIKNFTPFVFSNS* 192
C+ RS D K P V G +RR+ ++ +R CT + +NFT ++ +
Sbjct: 408 CKIEARSSDRYKAPEASHTVRRGAKRRLVYSQPYCQRVREQCTKKTCRENFTSVIYVRNA 467
Query: 191 CLPNKNM 171
L + M
Sbjct: 468 YLESTRM 474
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,088,706
Number of Sequences: 59808
Number of extensions: 371198
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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