Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0460
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
            T24B8.7b protein.
          Length = 2923

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 9    LVSSFFFFFQRILSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIK 143
            L +S+  F+Q +L  + ++ YR  ++  IVK G + FE+    +K
Sbjct: 1515 LNNSWVQFYQDVLVNSQQEAYRKYVQENIVKIGKDSFEITCVSLK 1559


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
            T24B8.7a protein.
          Length = 2920

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 9    LVSSFFFFFQRILSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIK 143
            L +S+  F+Q +L  + ++ YR  ++  IVK G + FE+    +K
Sbjct: 1512 LNNSWVQFYQDVLVNSQQEAYRKYVQENIVKIGKDSFEITCVSLK 1556


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
            T24B8.7b protein.
          Length = 2923

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 9    LVSSFFFFFQRILSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIK 143
            L +S+  F+Q +L  + ++ YR  ++  IVK G + FE+    +K
Sbjct: 1515 LNNSWVQFYQDVLVNSQQEAYRKYVQENIVKIGKDSFEITCVSLK 1559


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
            T24B8.7a protein.
          Length = 2920

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 9    LVSSFFFFFQRILSCALKDRYRGKIRNVIVKTGLNVFEVLIFLIK 143
            L +S+  F+Q +L  + ++ YR  ++  IVK G + FE+    +K
Sbjct: 1512 LNNSWVQFYQDVLVNSQQEAYRKYVQENIVKIGKDSFEITCVSLK 1556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,766,746
Number of Sequences: 27780
Number of extensions: 289250
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)