Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0460
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            26   0.33 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.0  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -2

Query: 382 GAAPHADP*LGPG--IFRNSREWTWSSVGRDVESF 284
           G   H DP   PG     +  EW W+ + ++ E F
Sbjct: 17  GEIAHNDPHFAPGHDAIVHLFEWKWNDIAKECEQF 51


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 256 QGRLMVSSLKKILRLYPQTTRSIRGCFGISLDLTTDRHAVRRPLVALM 399
           Q  LMV SL K+    P+  RS+   + I L+ T + H VR   V L+
Sbjct: 663 QRTLMVGSLGKLTETNPKLARSV--LYKIYLN-TMESHEVRCTAVFLL 707


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 478 NNSNFTVLCMNILDHV 431
           NN+N+  LC NI +H+
Sbjct: 95  NNNNYKQLCYNI-NHI 109


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 122 LKYI*SCFHYDISYFAPVPILQR 54
           +KY+  C    +  + PVP++ R
Sbjct: 397 MKYLERCLLETLRMYPPVPLIAR 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,340
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)