Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0460
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas...    30   1.4  
At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas...    29   1.8  
At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmi...    29   1.8  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    27   7.3  
At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2) id...    27   9.6  

>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
           / asparagine-tRNA ligase 1 (SYNC1) identical to
           SP|Q9SW96
          Length = 572

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 169 HIFLFGKHYELENTKGVKFLMEFWVVQP 252
           +++ FG  +  EN+   + L EFW+V+P
Sbjct: 328 NVYTFGPTFRAENSHTSRHLAEFWMVEP 355


>At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast,
           mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO)
           nearly identical to SP|O48593
          Length = 567

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 172 IFLFGKHYELENTKGVKFLMEFWVVQP 252
           ++ FG  +  EN+   + L EFW+++P
Sbjct: 326 VYTFGPTFRAENSNTSRHLAEFWMIEP 352


>At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmic,
           putative / asparagine-tRNA ligase, putative similar to
           SYNC1 protein GI:5670315 [SP|Q9SW96] from [Arabidopsis
           thaliana]
          Length = 571

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 172 IFLFGKHYELENTKGVKFLMEFWVVQP 252
           ++ FG  +  EN+   + L EFW+V+P
Sbjct: 326 VYTFGPTFRAENSHTSRHLAEFWMVEP 352


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 211 KGVKFLMEFWVVQPLQGRLMVSSLKKILRLYPQTTRSIRGCFGISLDLTTD 363
           +G KF      V  LQ R   SS+KKI +L  Q  +  R C  + +D  T+
Sbjct: 171 EGSKFTTRVQRVDKLQNR---SSMKKISKLPNQMRKKKRKCMKMGMDSVTN 218


>At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2)
           identical to serine palmitoyltransferase [Arabidopsis
           thaliana] GI:9309380; similar to serine
           palmitoyltransferase from Solanum tuberosum
           [GI:4995890], Homo sapiens [SP|O15270], Mus musculus
           [SP|P97363]; contains Pfam profile PF00155:
           aminotransferase, classes I and II
          Length = 489

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 484 TSNNSNFTVLCMNILDHVRVTLTHTSIDT*ERPVGAAPHA 365
           TSN   +  +C+   D     L H   D  ERP+ +AP A
Sbjct: 38  TSNLQGYAPICLGHEDFYIRRLYHRIQDCFERPISSAPDA 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,715,732
Number of Sequences: 28952
Number of extensions: 257085
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)