Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0459
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    31   0.006
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.0  
AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       21   5.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 31.1 bits (67), Expect = 0.006
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
 Frame = +3

Query: 222 DDEDSFKR---QFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKEL--KKDSVKQKRW 386
           +D+D +K+   QFSK IKLG+  D+      K  E +R   S    E    KD V + + 
Sbjct: 418 EDKDGYKKFYEQFSKNIKLGIHEDSQNR--AKLSELLRYHTSASGDEACSLKDYVSRIKP 475

Query: 387 NKRKLTLAERKNRIKQKKASFIKRLQ 464
           N++ +     +++ +   +SF++R++
Sbjct: 476 NQKHIYYITGESKEQVANSSFVERVK 501


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 32  YTHHYWCSCLWSYEG 76
           +T HY C C + Y G
Sbjct: 79  HTTHYTCHCPYGYTG 93


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 347
           ++E+DDED+ ++     I +    + +    KK H  ++  P  KK
Sbjct: 475 AVEEDDEDAIEKPAPVKISVQEVLNRVRKPTKKLH--LKNSPISKK 518


>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 347 ERVKERLGQTEALEQTQANIGREEKQ 424
           +R+ E + QTE++E  +  IGR  ++
Sbjct: 11  KRLFEHMLQTESIEPVKMAIGRPSEK 36


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 97  LRPPSTAPFIAPKT 56
           L PP++ P ++PK+
Sbjct: 106 LTPPNSEPLVSPKS 119


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 62  WSYEGCC*RWPQCSSFHQKIPWL*CRIQ 145
           WS       W  CSSF Q+     C I+
Sbjct: 403 WSVNAGMWMWLSCSSFFQQFFHCYCPIK 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,530
Number of Sequences: 336
Number of extensions: 2070
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)