Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0459
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 136 3e-33
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 134 8e-33
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.33
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.44
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.58
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 28 0.76
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.3
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 3.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 3.1
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 4.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 4.1
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 5.4
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 5.4
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 7.1
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 7.1
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 9.4
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 9.4
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 9.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.4
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 9.4
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 9.4
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 136 bits (328), Expect = 3e-33
Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 2/138 (1%)
Frame = +3
Query: 30 LTRTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 209
L RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM
Sbjct: 150 LKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYME 209
Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKR 383
L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+ + +
Sbjct: 210 MLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLK 269
Query: 384 WNKRKLTLAERKNRIKQK 437
+ +RKLT ERK R K
Sbjct: 270 YTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 134 bits (324), Expect = 8e-33
Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 2/138 (1%)
Frame = +3
Query: 30 LTRTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 209
L RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM
Sbjct: 150 LKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYME 209
Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKR 383
L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K K+ + +
Sbjct: 210 MLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLK 269
Query: 384 WNKRKLTLAERKNRIKQK 437
+RKLT ERK R K
Sbjct: 270 HTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.33
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 288 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 446
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 303 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRLQAQA 473
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++ ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQMSRES 765
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.58
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 315 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 446
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 28.3 bits (60), Expect = 0.76
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +3
Query: 237 FKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAER 416
F ++ +YIKL A + + + + A P KE+KK K KR T A
Sbjct: 392 FTKEDGEYIKL--IAGVMRSSGCEVPNWVMALPK-PSKEMKKKLKKSPPKRKRITTRASY 448
Query: 417 KNRIKQKKASFIKRLQAQA 473
+ +Q+K +IK+++ +A
Sbjct: 449 DRQKEQRKKEYIKKVKKEA 467
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +3
Query: 219 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 380
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 285 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 398
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 216 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 389
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 390 KRKLTLAERKNRIKQKKAS 446
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 291 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 458
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 276 TADAIEAIYKKAHEAIRADPSHKKKELK 359
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 4.1
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = +3
Query: 150 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 329
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 330 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 452
+ KKE D +K + ++ R + K S +
Sbjct: 419 SSENNKKE---DDLKDSTGDLNTTQVSSRVDNFLLKLPSMV 456
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +3
Query: 291 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 470
EA K+ + ++ + K++EL++ QKR K+K E+K + +Q++A K + Q
Sbjct: 636 EARKKREEQRLKREQEKKQQELER----QKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
Score = 24.6 bits (51), Expect = 9.4
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 306 KAHEAIRADPSHKK-KELKKDSVKQKRWNKRK-LTLAERKNRIKQKKASFIKRLQAQ 470
K E I + K+ +ELKK K+K+ +K+K L LA+ + R ++++A + AQ
Sbjct: 571 KLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEER-QRREAERLAEQAAQ 626
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 303 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 458
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 195 AEYMRSLEQDDEDSFKRQFSKYIK 266
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 303 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 443
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 342 KKKELKKDSVKQKRWNKRK 398
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 330 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 437
D KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 327 ADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 422
+DP + KK SV +K W +R+ TL +++
Sbjct: 76 SDPLPAEFYFKKGSVGEKDWQERQKTLKGKES 107
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 291 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 422
E I + + H++K+ ++ V++K KRK +R+N
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 348 KELKKDSVKQKRWNKRKLTLAER--KNRIKQKKASFIKRLQAQAEA 479
+E + DS + ++ + + AE+ KNR +KKAS ++ LQ EA
Sbjct: 553 REDENDSEQLDHFDMKSILKAEKFKKNRKLKKKASNLEGLQEGFEA 598
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 303 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQ 434
KK H A + P +KK+LKK S N + +A +Q
Sbjct: 4 KKGHYAKHSGPKAEKKKLKKVSDGSASNNPKAFAVASAGRMARQ 47
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 312 HEAIRADPSHKKKELKKDSVKQKRWNKRK 398
HE RA +KKE + ++V++KR NK++
Sbjct: 332 HEQSRALKEKRKKE-QDENVRRKRENKKR 359
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 168 RAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAI 290
R + GL VAEY R +E D F ++ + G A+
Sbjct: 277 RVALTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSAL 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,746
Number of Sequences: 5004
Number of extensions: 36665
Number of successful extensions: 203
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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