Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0459
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 157 7e-39
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 155 2e-38
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 31 0.58
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 0.77
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415 30 1.3
02_01_0475 + 3422629-3422695,3422960-3423216 29 2.4
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512... 29 3.1
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 3.1
05_04_0084 - 17788077-17789240 28 5.4
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 28 5.4
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 27 7.2
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 27 7.2
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 27 9.5
01_06_1261 - 35826513-35828941,35829201-35829294 27 9.5
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 157 bits (380), Expect = 7e-39
Identities = 73/146 (50%), Positives = 106/146 (72%)
Frame = +3
Query: 30 LTRTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 209
L RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMR
Sbjct: 147 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMR 206
Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 389
S+ +++ + F+ FS+Y+K G+ AD +EA+YKK H AIRADP+ K KK+ KR+N
Sbjct: 207 SMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPT-MAKSTKKEPATHKRYN 265
Query: 390 KRKLTLAERKNRIKQKKASFIKRLQA 467
+KLT +Q+KAS ++RL A
Sbjct: 266 LKKLT-------YEQRKASLVERLNA 284
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 155 bits (377), Expect = 2e-38
Identities = 72/146 (49%), Positives = 106/146 (72%)
Frame = +3
Query: 30 LTRTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 209
L RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMR
Sbjct: 147 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMR 206
Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 389
S+ +++ + F+ FS+Y+K G+ AD +E++YKK H AIRADP+ K KK+ KR+N
Sbjct: 207 SMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPT-MAKSTKKEPATHKRYN 265
Query: 390 KRKLTLAERKNRIKQKKASFIKRLQA 467
+KLT +Q+KAS ++RL A
Sbjct: 266 LKKLT-------YEQRKASLVERLNA 284
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 31.1 bits (67), Expect = 0.58
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Frame = +3
Query: 192 VAEYMRSLEQD--DEDSFKRQFSKYIKLGVTA--DAIEAIYKKAHEAIRADPSHKKKELK 359
V E +R +D + + K + + ++ G+ D ++A +K E + HK ++ +
Sbjct: 167 VEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQLFDEVDAQLQKEKETALREARHKAEQER 226
Query: 360 KDSVKQKRW---NKRKLTLAERKNRIKQKKASF-----IKRLQAQAE 476
++ + R N+RK+ A+RK ++Q++ ++R+Q Q E
Sbjct: 227 REREELDRMLEENRRKVEEAQRKEALEQQQKELERFLELERIQKQRE 273
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 342 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 440
KKK+ KK K+K+ NK+K ++K + K+KK
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 297 IYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 452
+ KK + + KKK+ KK + K+K+ K+K ++K R KA I
Sbjct: 66 VMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQHI 117
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 342 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 458
KKK+ KK K+K+ K+K ++K + K+KK KR
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
Length = 126
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 288 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 440
+E KKA ++ P KKK+ KK K+K+ K+K E ++ ++Q+K
Sbjct: 40 LELRKKKAKAKVKKKP--KKKKNKKAKKKKKKKKKKKKEEEEEESDVRQQK 88
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 264 KLGVTADA----IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIK 431
+LG DA ++ + + A+ + KKK+ KK K+K+ K+K ++K + K
Sbjct: 14 RLGTDLDAYGFRVQVVLQLAYTIFGFEEGKKKKKKKKKKKKKKK--KKKKKKKKKKKKKK 71
Query: 432 QKKASFIKRLQA 467
K +S + L A
Sbjct: 72 NKLSSAVTNLGA 83
>04_04_1146 +
31249488-31249722,31250145-31250236,31251158-31251209,
31251377-31251477,31251587-31252020,31252453-31252507,
31252614-31252667,31252774-31253190
Length = 479
Score = 28.7 bits (61), Expect = 3.1
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +3
Query: 81 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS-LEQDDEDSFKRQFSK 257
VDG +VP + G DA ++ A HR + HV ++ L + D F +
Sbjct: 329 VDGDGSVPVESAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLND 388
Query: 258 YIKLGVTADAIEAIYKKAHE--AIRAD---PSHKKKELKK 362
Y+ L TA IE ++K + ++R D SH+ E K+
Sbjct: 389 YVIL-PTAFEIEKYHEKHGDITSVREDWEIISHRDDESKR 427
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 267 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNK 392
LG++ A+EA YK+++E+ A+P KK + +W++
Sbjct: 748 LGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR 789
>05_04_0084 - 17788077-17789240
Length = 387
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 303 KKAHEAIRADPSHKKKELKKDSVKQKR----WNKRKLTLAERKNRIKQKKASFIK 455
+ A E + DP K+ +KKD +Q++ W +R+ + ++K + K+ I+
Sbjct: 300 RAAGEKVHDDPKLIKESMKKDKKRQQKHAEQWKERQKMVDKQKKERQSKRTENIR 354
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 335 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 439
+P E+ V ER + E LE + I EEK+ + +E
Sbjct: 518 LPSEDSVSERRRKLEFLEMQEELIKEEEKKKEKEE 552
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 378 KRWNKRKLTLAERKNRIKQKK 440
+RW K KL+ +ERK R ++ K
Sbjct: 229 ERWKKEKLSKSERKRRAREAK 249
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 360 KDSVKQKRWNKRKLTLAERKNRIKQKKASFI 452
KD KQK + K +L L ERK + K+ F+
Sbjct: 142 KDERKQKVFYKNQLELEERKKKALDKQLDFL 172
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 324 RADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 452
R +PS K KK K+K+ K+K ++K + K+KK F+
Sbjct: 363 RLNPSKTIKRKKKKKKKKKK--KKKKKKKKKKKKKKKKKLRFV 403
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 335 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSGGSLN 484
I ++ ERL Q E + QT IG K ++ G +HQ+ SLN
Sbjct: 377 IEDSSKLSERLKQVEEVLQTIQRIG---KSVHSENGNIHQQLTEVDDSLN 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,024
Number of Sequences: 37544
Number of extensions: 235709
Number of successful extensions: 865
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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