Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0459
         (533 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...   180   2e-47
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    27   0.30 
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   2.1  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    25   2.1  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   3.7  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.4  
CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    23   8.5  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score =  180 bits (439), Expect = 2e-47
 Identities = 82/132 (62%), Positives = 101/132 (76%)
 Frame = +3

Query: 30  LTRTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 209
           L RTTTG+RVFGAMKGAVDGGLN+PHS+KRFPGY AE+K FNAE+HR HIFGLHVA YMR
Sbjct: 150 LARTTTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMR 209

Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 389
           +LE++DE++FKRQFSKYI LG+ AD IE IYK AH +IR  P  ++   ++      RW 
Sbjct: 210 TLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRKIPPSRRNPRRRSPRSGGRWP 269

Query: 390 KRKLTLAERKNR 425
             +   A R++R
Sbjct: 270 SCRSPPARRRSR 281



 Score = 24.6 bits (51), Expect = 2.1
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 4   AFRCYLDVG 30
           AFRCYLDVG
Sbjct: 141 AFRCYLDVG 149



 Score = 23.4 bits (48), Expect = 4.9
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = +1

Query: 289 LKPSTRKPMKPSVRIHPXXXXXXXXXXXXXXAGTNAS*HWPRGKTESSKRRLPSSR 456
           + PS R P + S R                   T  +  WPR +  S  +RLP  R
Sbjct: 250 IPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPT-SWPRSRPTSKPKRLPRRR 304


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 291 EAIYKKAHEAIRADPSHKKKE 353
           +++Y+K  + +R DP+HK  E
Sbjct: 238 DSVYRKVRDTVRDDPAHKNLE 258


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 21  GCRLTRTTTGARVFGAMKGAVDGGLN 98
           GC    +TT    F  + GA+ GGL+
Sbjct: 424 GCNGLHSTTATNRFSGLVGALGGGLS 449


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 291 EAIYKKAHEAIRADPSHK 344
           E +Y+   +AI+ DP+HK
Sbjct: 212 ETVYQMVKDAIKFDPAHK 229


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 90  HRQQHPS*LQRHEH 49
           H+QQHP   Q H H
Sbjct: 173 HQQQHPGHSQHHHH 186


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 300 YKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASF--IKRLQAQA 473
           + K    +RA    +KK L++ + ++KR  + +    + K  I++ +A    + R + + 
Sbjct: 385 FAKVQANMRATNERRKKTLEQIAAEEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEV 444

Query: 474 EA 479
           EA
Sbjct: 445 EA 446


>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 377 EALEQTQANIGREEKQNQAKEGF-LHQETAGSGGSLNAL 490
           +ALE+  AN+  E  Q +AKEG    ++  G GGS + +
Sbjct: 268 QALEREAANVTVELLQ-EAKEGADKFRQGIGRGGSFSGI 305


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,548
Number of Sequences: 2352
Number of extensions: 9478
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49474503
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)