Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0459
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 159 1e-39
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 155 1e-38
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 37 0.010
At4g40020.1 68417.m05666 hypothetical protein 33 0.091
At1g03080.1 68414.m00282 kinase interacting family protein simil... 33 0.091
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ... 32 0.21
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.37
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 31 0.48
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 31 0.48
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 31 0.48
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 31 0.64
At4g33690.1 68417.m04785 expressed protein 30 0.84
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 29 1.5
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 29 1.5
At5g22080.1 68418.m02571 DNAJ heat shock N-terminal domain-conta... 29 2.6
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 28 3.4
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 3.4
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 4.5
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 4.5
At3g58330.1 68416.m06502 hypothetical protein 28 4.5
At3g27025.1 68416.m03381 expressed protein 27 5.9
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 27 5.9
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 27 7.9
At4g37860.1 68417.m05355 hypothetical protein 27 7.9
At3g23310.1 68416.m02940 protein kinase, putative contains prote... 27 7.9
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 7.9
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 159 bits (386), Expect = 1e-39
Identities = 73/136 (53%), Positives = 102/136 (75%)
Frame = +3
Query: 30 LTRTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 209
L RTTTG RVFGA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+
Sbjct: 149 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMK 208
Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 389
L +D+ + + FS YIK GV A++IE +YKK H AIRA+P+HKK E K + KR+N
Sbjct: 209 LLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTE-KSAPKEHKRYN 267
Query: 390 KRKLTLAERKNRIKQK 437
+KLT ERKN++ ++
Sbjct: 268 LKKLTYEERKNKLIER 283
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 155 bits (377), Expect = 1e-38
Identities = 72/136 (52%), Positives = 101/136 (74%)
Frame = +3
Query: 30 LTRTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 209
L RTTTG RVFGA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+
Sbjct: 149 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMK 208
Query: 210 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 389
L +D+ + + FS YIK GV A++IE +YKK H AIRADP + KK +K + KR+N
Sbjct: 209 LLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADP-NPKKTVKPAPKQHKRYN 267
Query: 390 KRKLTLAERKNRIKQK 437
+KLT ERKN++ ++
Sbjct: 268 LKKLTYEERKNKLIER 283
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 162 VHRAHIFGLHVAE-YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPS 338
+H +++ G+H Y ++ E+ S + ++KL + EA K+ E R D
Sbjct: 87 IHMSYLAGIHFNSIYKKNKEKGSRSSSSSSSAVWMKLQRKKEN-EAKKKEEEEKERKDME 145
Query: 339 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 440
++K+ K+ K+ + +K+K + + K K+KK
Sbjct: 146 KEEKKKDKEDKKKDKEDKKKAKVQKEKKEKKEKK 179
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 33.5 bits (73), Expect = 0.091
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +3
Query: 132 DAESKKFNAEVHRAHIFGLH--VAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYK 305
+ E K N V +I L ++E ++E++ + S RQ S + + +E + K
Sbjct: 343 EIERVKVNEAVANDNIKKLKKMLSEIEVAMEEEKQRSLNRQES------MPKEVVEVVEK 396
Query: 306 KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 461
K E + + + K+ KK+S K+K+ + K E K + +Q +F KR+
Sbjct: 397 KIEEKEKKEEKKENKKEKKESKKEKKEHSEK---KEDKEKKEQTHQNFDKRM 445
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 33.5 bits (73), Expect = 0.091
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = +3
Query: 144 KKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK-RQFSKYIKLGVTA--DAIEAIYKKAH 314
KK + V + + GLH + S+++ E++ K ++ + + TA + +E + K
Sbjct: 612 KKHQSMVEQVELVGLHPESFGSSVKELQEENSKLKEIRERESIEKTALIEKLEMMEKLVQ 671
Query: 315 EAIRADPSHKKKELKKDSV--KQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAE 476
+ + + S + +++ K K + ++LAE K+ + +K I RLQ+ E
Sbjct: 672 KNLLLENSISDLNAELETIRGKLKTLEEASMSLAEEKSGLHSEKDMLISRLQSATE 727
>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 816
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 300 YKKAHEAIRADPSHKKKELKKDSVKQKRWNK-RKLTLAERKNRIKQKKASFIK 455
+++A + D K K+L + KRWN R+LTLA + ++++ ++F+K
Sbjct: 60 HRQAQIGMLFDTLEKGKKLTDKVLSSKRWNLYRQLTLARKMEKLEKTISNFLK 112
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 31.5 bits (68), Expect = 0.37
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = +3
Query: 222 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKL 401
++ ++ + + G+ + I ++ +KA E R K ++ K+ K+KR +K K
Sbjct: 765 EESQEYRSIGDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKE 824
Query: 402 TLAERKNRIKQKKASFIKRLQAQAEA*M 485
+ + R K+K KR ++ E M
Sbjct: 825 RREKEREREKEKGKERSKREESDGETAM 852
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +3
Query: 288 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 467
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 264 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVRY 322
Query: 468 QA 473
Q+
Sbjct: 323 QS 324
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +3
Query: 288 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 467
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 381 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVRY 439
Query: 468 QA 473
Q+
Sbjct: 440 QS 441
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 31.1 bits (67), Expect = 0.48
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +3
Query: 288 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 467
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 96 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVRY 154
Query: 468 QA 473
Q+
Sbjct: 155 QS 156
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 324 RADPSHKKKELKK-DSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 458
R DP KK+ K+ DS +KR + T A +K R+KQ SF+K+
Sbjct: 468 RVDPRFMKKKTKEVDSNVKKRETLPEKT-ARKKKRLKQINMSFVKK 512
>At4g33690.1 68417.m04785 expressed protein
Length = 281
Score = 30.3 bits (65), Expect = 0.84
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 291 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 398
E +YK+AH R HKKK KK K+K+ +++K
Sbjct: 243 EEVYKRAH---RKRKEHKKKLSKKHKSKEKKRDRKK 275
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 308 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 406
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 308 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 406
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At5g22080.1 68418.m02571 DNAJ heat shock N-terminal
domain-containing protein similar to J-domain protein
Jiv [Bos taurus] GI:15777193; contains Pfam profile
PF00226 DnaJ domain
Length = 246
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 246 QFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNR 425
+F K +KL V + +++ A+R S ++ LKKD +QK K+K E+
Sbjct: 143 EFQKELKLKVREILTDQEWRRRKMAMRI--SEEEGRLKKDEAEQKEIWKKKREHEEQWEG 200
Query: 426 IKQKKAS 446
++K+ S
Sbjct: 201 TREKRVS 207
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 291 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERK--NRIKQKKASFIKR 458
E K+A+E+ + + KK E KK S ++ K + T ERK N +KKA ++
Sbjct: 747 EETQKEANESTKKERKRKKSESKKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEE 806
Query: 459 LQAQAEA 479
+ + E+
Sbjct: 807 EETRKES 813
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 342 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 440
K+KE KKD K+++ KR+ + K R+K++K
Sbjct: 1287 KEKEKKKDKEKKEKKRKREDPVYLEKKRLKKEK 1319
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 210 SLEQDD-EDSFKRQFSKYIK--LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 380
S E DD ++S +R K K G+ + + K+ + + PS+KK+ K S +++
Sbjct: 821 SYEDDDHQNSLRRSKRKKHKKEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKE 880
Query: 381 RWNKRKLTLAERKNRIKQKKA 443
K + + R R + A
Sbjct: 881 SKRKSSKSKSSRPRRAAARNA 901
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 344 EERVKERLGQTEALEQTQANIGREEKQNQAKE 439
E R+KE + E ++ +A + +EEK+ Q KE
Sbjct: 750 ERRIKEAREKAELEQRLKATLEQEEKERQIKE 781
>At3g58330.1 68416.m06502 hypothetical protein
Length = 173
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = +3
Query: 324 RADPSHKKKELKKDS-VK----QKRWNKRKLTLAERKNRIKQKKASFIKRLQ 464
+ D ++ KKE ++ S V+ +++ NKRKLTL++ ++ +K++KA+ + Q
Sbjct: 116 KLDEAYLKKEKQRISGVRIRELEEQVNKRKLTLSDLESDLKKEKANQLSMAQ 167
>At3g27025.1 68416.m03381 expressed protein
Length = 299
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Frame = +3
Query: 246 QFSKYIKLGVTADAIEAIYKKAHEA---IRADP-----SHKKKELKKD 365
Q YI+ T DAI+ ++KK H A R D S KKK+LKK+
Sbjct: 183 QGEPYIEKHSTRDAIKRVFKKLHGASSKTRNDDEDDSMSKKKKDLKKN 230
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 159 EVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 278
E HR H G V L+ DD +S++ + +K+ +T
Sbjct: 502 EFHRPHSVGTSVENQPTQLDWDDLESYRCIIQELVKINLT 541
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 122 ESFDGMRNIEATVNSTLHSSKDTSTSSGACKP 27
ES G+R E N L +S+ TST G KP
Sbjct: 82 ESVTGVRTDERNPNIGLGNSRSTSTGHGNTKP 113
>At4g37860.1 68417.m05355 hypothetical protein
Length = 354
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 335 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSG 472
I +EE+ ERL + E EQ + E + Q K+ H + G G
Sbjct: 294 IMREEKRSERLAKKEDAEQLRLVEEEERVRRQKKQKLSHLKNCGLG 339
>At3g23310.1 68416.m02940 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 568
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +3
Query: 300 YKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAE 476
YK E + D ELKK S K KR + + L E + + SF+K L Q E
Sbjct: 484 YKNV-EIVNHDQLPGIAELKKKSTKPKRPSIKSLFEDESASSTTSHQGSFMKLLPTQIE 541
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 249 FSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 389
F KY + D ++ Y++ +++RA HK L+ D K+K ++
Sbjct: 330 FKKYSAVTFLLDDMD-FYEEREKSLRAKKEHKPATLRMDLFKEKDYD 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,351,719
Number of Sequences: 28952
Number of extensions: 193467
Number of successful extensions: 871
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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