Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0458
(677 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 255 3e-70
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 255 3e-70
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 3.5
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 4.7
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 255 bits (624), Expect = 3e-70
Identities = 120/149 (80%), Positives = 129/149 (86%)
Frame = +1
Query: 139 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 318
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 319 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 498
VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120
Query: 499 XXXXXXXTSLCFVYPLDFARTRLAADVGK 585
TSLCFVYPLDFARTRLAADVGK
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGK 149
Score = 55.6 bits (128), Expect = 4e-10
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 584 RGDGQREFSGLGNCISKIFKSDGLIGLYRGF 676
+ G+REF+GLGNC++KIFK+DG+ GLYRGF
Sbjct: 149 KAGGEREFTGLGNCLTKIFKADGITGLYRGF 179
Score = 30.3 bits (65), Expect = 0.018
Identities = 32/142 (22%), Positives = 54/142 (38%)
Frame = +1
Query: 166 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 345
F + +GG + A S V P++ + L V K ++ + G+ + +I K G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172
Query: 346 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTS 525
+RG +V +A F F D + + KKT F + S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230
Query: 526 LCFVYPLDFARTRLAADVGKGR 591
YP D R R+ G+ +
Sbjct: 231 ----YPFDTVRRRMMMQSGRAK 248
Score = 27.5 bits (58), Expect = 0.12
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 226 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 384
P + V+ + +Q S + ++ YK + + I K +G +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 255 bits (624), Expect = 3e-70
Identities = 120/149 (80%), Positives = 129/149 (86%)
Frame = +1
Query: 139 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 318
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 319 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 498
VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120
Query: 499 XXXXXXXTSLCFVYPLDFARTRLAADVGK 585
TSLCFVYPLDFARTRLAADVGK
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGK 149
Score = 55.6 bits (128), Expect = 4e-10
Identities = 21/31 (67%), Positives = 28/31 (90%)
Frame = +2
Query: 584 RGDGQREFSGLGNCISKIFKSDGLIGLYRGF 676
+ G+REF+GLGNC++KIFK+DG+ GLYRGF
Sbjct: 149 KAGGEREFTGLGNCLTKIFKADGITGLYRGF 179
Score = 30.3 bits (65), Expect = 0.018
Identities = 32/142 (22%), Positives = 54/142 (38%)
Frame = +1
Query: 166 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 345
F + +GG + A S V P++ + L V K ++ + G+ + +I K G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172
Query: 346 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTS 525
+RG +V +A F F D + + KKT F + S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230
Query: 526 LCFVYPLDFARTRLAADVGKGR 591
YP D R R+ G+ +
Sbjct: 231 ----YPFDTVRRRMMMQSGRAK 248
Score = 27.5 bits (58), Expect = 0.12
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 226 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 384
P + V+ + +Q S + ++ YK + + I K +G +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 612 PENSRWPSPLTDIGGKTGTCEVK 544
P N RW P ++GG +G K
Sbjct: 613 PLNIRWSYPGEEMGGSSGVLAKK 635
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.2 bits (45), Expect = 4.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 597 WPSPLTDIGGKTGTCE 550
W +P+T+IGG + E
Sbjct: 439 WDAPITEIGGDSDLVE 454
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,428
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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