Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0456
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.1  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   3.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.6  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 338 KLAFVIRIRGINQVSPKVRKVLQL 409
           KL FV+R+ GI  +   +RK ++L
Sbjct: 359 KLWFVLRLYGIENLQAFIRKHVEL 382


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 564 LSLANPRLYTNSRTLF 517
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 93  KTVRSCLLYQSQCSSIVRGERLFALG 170
           K V  C L +S   + + G R  ALG
Sbjct: 496 KVVAECTLKESAAINQILGRRWHALG 521


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 93  KTVRSCLLYQSQCSSIVRGERLFALG 170
           K V  C L +S   + + G R  ALG
Sbjct: 388 KVVAECTLKESAAINQILGRRWHALG 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,062
Number of Sequences: 336
Number of extensions: 3103
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)