Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0456
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 193 1e-49
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 192 3e-49
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 112 2e-25
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 1.8
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 5.4
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 7.1
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 9.4
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 193 bits (470), Expect = 1e-49
Identities = 89/168 (52%), Positives = 122/168 (72%)
Frame = +2
Query: 104 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 283
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 284 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 463
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 464 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEK 607
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEE 174
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 192 bits (467), Expect = 3e-49
Identities = 87/165 (52%), Positives = 122/165 (73%)
Frame = +2
Query: 116 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 295
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 296 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 475
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 476 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKS 610
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+S
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEES 174
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 112 bits (270), Expect = 2e-25
Identities = 61/177 (34%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Frame = +2
Query: 89 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 268
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 269 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 439
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 440 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKS 610
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK+
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKA 177
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 182 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 322
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 327 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 425
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 490 LHCLGIPQLKECP*VSIQTWIRQAEW 567
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 306 IVATTTFPGKPNWHLSSESVVSTKFH 383
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,881,238
Number of Sequences: 37544
Number of extensions: 319556
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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