Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0456
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      225   3e-59
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   1.4  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   7.3  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)                27   9.7  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  225 bits (549), Expect = 3e-59
 Identities = 108/172 (62%), Positives = 132/172 (76%)
 Frame = +2

Query: 92  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 271
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 272 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 451
            DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 452 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEK 607
           NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEK 174


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 291 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 395
           P +HA    T  P + N H +S S  +T   RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 447 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASLISSRS 268
           RT  PLF    L  C   R    TW  P + +  + L       +      +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353

Query: 267 LMRYSLTY--CSALLKIS 220
           + ++ L +  CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 194 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 319
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 194 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 319
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 621 VFMELFSTMLLEVIGIRCPLSLANPRLYTNSRTLFKL 511
           V+  L +T+++  + +R   SLANP LYT  +T F+L
Sbjct: 273 VYAVLPTTVIILTLFLRFLSSLANPLLYTFFKTDFQL 309


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 266 KERDEIRLARQARNRGNYYVP 328
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 284  RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 397
            RL R  + R NYY+  +  +AF + I  + +  P  R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923


>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 504 PQAM*GSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFG 382
           P+ +  + +  +++V+L  R N  LF  RSL SC   RT+G
Sbjct: 428 PRVLCATLLPVVYSVSLDSRYNE-LFTGRSLQSCGNQRTWG 467


>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
          Length = 482

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +2

Query: 77  PVKGKEDSKKLP--AVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYV 250
           P K KE SK +   AV +S+LK             + T  ++  AI KKR  +    +Y+
Sbjct: 305 PAK-KESSKHIEKNAVKKSILKAPKRNAKKAATDAEQTTTKK--AIDKKRRRYNSRRRYI 361

Query: 251 KEYRIKERDEIRLARQARNR 310
           +  R   R      R  R R
Sbjct: 362 RRRRFTSRRRATRRRYTRRR 381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,523
Number of Sequences: 59808
Number of extensions: 384413
Number of successful extensions: 896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)