Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0456
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 191 4e-49
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 191 4e-49
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 187 5e-48
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 187 5e-48
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 187 5e-48
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 186 1e-47
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 116 1e-26
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.5
At3g52860.1 68416.m05825 expressed protein 30 1.5
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 2.6
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 2.6
At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative... 29 2.6
At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative... 29 2.6
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 6.0
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 6.0
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 7.9
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 191 bits (465), Expect = 4e-49
Identities = 90/165 (54%), Positives = 120/165 (72%)
Frame = +2
Query: 116 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 295
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 296 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 475
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 476 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKS 610
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV+++
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQA 177
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 191 bits (465), Expect = 4e-49
Identities = 90/165 (54%), Positives = 120/165 (72%)
Frame = +2
Query: 116 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 295
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 296 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 475
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 476 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKS 610
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV+++
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQA 172
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 187 bits (456), Expect = 5e-48
Identities = 90/171 (52%), Positives = 121/171 (70%)
Frame = +2
Query: 95 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 274
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 275 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 454
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 455 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEK 607
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQ 173
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 187 bits (456), Expect = 5e-48
Identities = 90/171 (52%), Positives = 121/171 (70%)
Frame = +2
Query: 95 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 274
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 275 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 454
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 455 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEK 607
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQ 173
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 187 bits (456), Expect = 5e-48
Identities = 90/171 (52%), Positives = 121/171 (70%)
Frame = +2
Query: 95 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 274
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 275 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 454
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 455 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEK 607
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQ 173
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 186 bits (452), Expect = 1e-47
Identities = 90/165 (54%), Positives = 118/165 (71%)
Frame = +2
Query: 116 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 295
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 296 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 475
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 476 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKS 610
R EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE++
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQA 172
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 116 bits (279), Expect = 1e-26
Identities = 58/174 (33%), Positives = 97/174 (55%)
Frame = +2
Query: 89 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 268
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 269 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 448
E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 449 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKS 610
+ L +PY+ +GYPN KSV++L+YK+G + G +P+T N+I+E++
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQA 176
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 114 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 284
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 285 D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 401
PD+ + + PG+P WH+ ++ H S KF
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 173 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 283
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 294 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 416
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 294 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 416
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593
>At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative
similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
Length = 269
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 617 LWSSSQQCCWK*LVYVVHSAWRIHVCILTHG 525
LW+ Q WK +V VHS I C + HG
Sbjct: 77 LWNRDQVEAWKPIVDAVHSKGGIFFCQIWHG 107
>At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative
similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
Length = 269
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 617 LWSSSQQCCWK*LVYVVHSAWRIHVCILTHG 525
LW+ Q WK +V VHS I C + HG
Sbjct: 77 LWNRDQVEAWKPIVDAVHSKGGIFFCQIWHG 107
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -2
Query: 486 SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 349
S R FT++ F+R N+ + I+R+ C TL + ++W+ +I+ +
Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 322 RSRGSQIGICHPNPWYQPSFTEG 390
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 234 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 386
G + T R+ +R + SD K+ V+ T GK HLS E VS F R
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,099
Number of Sequences: 28952
Number of extensions: 262316
Number of successful extensions: 639
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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