Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0454
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   0.87 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   6.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   6.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   8.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   8.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 13  LICMLF*IRPFFFYKCISY 69
           L+C+ + + P FF  CI Y
Sbjct: 130 LLCIYYFVVPLFFLLCIYY 148


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 210 YLYHTIILPI*YPHYKNRIGALTS 281
           Y+Y  I L I  PH+   + A T+
Sbjct: 120 YIYGIIFLSILIPHFLLPVAAWTN 143


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 210 YLYHTIILPI*YPHYKNRIGALTS 281
           Y+Y  I L I  PH+   + A T+
Sbjct: 120 YIYGIIFLSILIPHFLLPVAAWTN 143


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 182 CLVVFGSIVVPI 217
           CL V G+++VPI
Sbjct: 80  CLGVIGNVMVPI 91


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 182 CLVVFGSIVVPI 217
           CL V G+++VPI
Sbjct: 80  CLGVIGNVMVPI 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,524
Number of Sequences: 336
Number of extensions: 2034
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)