Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0454
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    27   1.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   2.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   2.6  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 130 VFFEINFVNYSKFKNIMNLYD 68
           VF E+N +   K KN++NL+D
Sbjct: 109 VFKEVNIMRRVKHKNVVNLFD 129


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 121 EINFVNYSKFKNIMNLYDKKCIYKKKTDE 35
           E+N +NYS    ++N++ K+  Y  + D+
Sbjct: 814 EVNLLNYSLENVVLNIFKKQTPYYNQADK 842


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 252  YKNRIGALTSLIRCES--GVGQKKKKT-GFPFKPLLSLKT*LPYH 377
            YK  +G  T++I CE   G+G   +KT  F  K + S +T   +H
Sbjct: 1050 YKEGLGNTTTIICCEPVIGLGHNYQKTYAFKRKDVTSFRTLDDFH 1094


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,570
Number of Sequences: 5004
Number of extensions: 31731
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)