Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0454
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223...    27   5.7  
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931...    27   7.6  

>06_01_0308 +
           2229025-2229260,2229448-2230145,2230377-2230469,
           2230815-2231992
          Length = 734

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -1

Query: 184 AGLGRLIVPVPLICNSXMVFFEINFVNYSKFKNIMNLYDKKCIYKKKTDEFK 29
           +G+G   VP+    ++ +  F + F NY+  K ++N   +   +  + D+FK
Sbjct: 186 SGMGCCQVPI----STNLRRFSLGFYNYNTTKKVLNFSSRSYAFVVEKDQFK 233


>10_06_0154 -
           11291630-11292106,11292192-11292457,11293027-11293131,
           11293210-11293234,11293349-11293465,11293528-11294041,
           11295524-11295578,11295980-11296060,11296129-11296219,
           11296321-11296417,11297465-11297529,11297950-11298108,
           11298208-11298455,11300667-11300835
          Length = 822

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 91  KNIMNLYDKKCIYKKKTDEFKK 26
           K  +++ DKKCI KKK   F+K
Sbjct: 688 KEEVSIVDKKCIGKKKKRRFRK 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,594,581
Number of Sequences: 37544
Number of extensions: 175725
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)