Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0454
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        32   0.21 
SB_39653| Best HMM Match : TP2 (HMM E-Value=1.2)                       28   3.4  

>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 103 YSKFKNIMNLYDKKCIYKKKTDEFKKAYIL 14
           Y + K +++LYDK+CIY +KT + K   +L
Sbjct: 29  YLQSKLVLDLYDKECIYVEKTSKKKAQRLL 58


>SB_39653| Best HMM Match : TP2 (HMM E-Value=1.2)
          Length = 243

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 318 KKTGF-PFKPLLSLKT*LPYHCIY 386
           + TGF P KPL S+K   PYH  Y
Sbjct: 21  RATGFKPLKPLSSIKMRCPYHWAY 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,563,503
Number of Sequences: 59808
Number of extensions: 210531
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)