Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0454
         (409 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075480-1|ABF85763.1|  157|Drosophila melanogaster RE38359p pro...    28   5.4  

>AY075480-1|ABF85763.1|  157|Drosophila melanogaster RE38359p
           protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -1

Query: 235 GRIMVWYRYHNTTKYYQAGLGRLIVPVPLICNSXMVFFEINFVNYSKFKNIMNLYDKKCI 56
           G +   +R+ N  + +  GL         IC   + F  + F N   + +I  +  +KC 
Sbjct: 93  GSVWATFRWLNNKRKFFPGLNFFKSVSGRICKISIKFGSLEFKNNQTYLHIKRIKCRKCR 152

Query: 55  YKKK 44
            KKK
Sbjct: 153 EKKK 156


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,752,821
Number of Sequences: 53049
Number of extensions: 318314
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)