Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0454
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    28   3.0  
L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    28   3.0  
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    28   3.0  
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    27   3.9  
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    27   3.9  

>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 126 NTIXELQIKGTGTMSLPRPAW*YLVVLWYLYHTI 227
           NTI  L +    ++ +P+  +  L + WYLYHT+
Sbjct: 193 NTIPCLCLIFMFSLIIPQALYFVLSIFWYLYHTV 226


>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 106 NYSKFKNIMNLYDKKCIYKKKTDEFKKAY 20
           N   F ++ +LY ++C+ K+K+ E  KA+
Sbjct: 95  NNQTFTSLCDLYRERCLCKRKSKECSKAF 123


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 106 NYSKFKNIMNLYDKKCIYKKKTDEFKKAY 20
           N   F ++ +LY ++C+ K+K+ E  KA+
Sbjct: 95  NNQTFTSLCDLYRERCLCKRKSKECSKAF 123


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 187 QAGLGRLIVPVPLICNSXMVFFEINFVNYSKFKNIMNLY 71
           Q  +  +++ VP+I    M+F  ++ VN   F N++N Y
Sbjct: 249 QIAIPLIVIFVPIIAG--MIFKALSIVNPQAFSNLLNFY 285


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 187 QAGLGRLIVPVPLICNSXMVFFEINFVNYSKFKNIMNLY 71
           Q  +  +++ VP+I    M+F  ++ VN   F N++N Y
Sbjct: 249 QIAIPLIVIFVPIIAG--MIFKALSIVNPQAFSNLLNFY 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,244
Number of Sequences: 27780
Number of extensions: 173035
Number of successful extensions: 319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)