Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0454
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   0.33 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   9.4  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 115 NFVNYSKFKNIMNLYDKKCIY 53
           N+ NY+ + N  N Y+KK  Y
Sbjct: 90  NYSNYNNYNNNYNNYNKKLYY 110


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 257 FVVWVSYRQDYGMV*VPQYYQILP 186
           FV  V  RQD   V  P  Y+ILP
Sbjct: 140 FVAAVLTRQDTQSVIFPPVYEILP 163


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 118 INFVNYSKFKNIMNLYD 68
           IN +NYS F N+   YD
Sbjct: 129 INRLNYSAFVNLTAYYD 145


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 186 W*YLVVLWYLYHTIILPI 239
           W  LVV+ Y Y +I+L I
Sbjct: 214 WFPLVVIIYTYTSILLEI 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,699
Number of Sequences: 438
Number of extensions: 2322
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)